Hb_001969_020

Information

Type -
Description -
Location Contig1969: 15737-16719
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04700g
description hypothetical protein
nr
ID XP_006378196.1
description hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
swissprot
ID Q9LUV2
description Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1
trembl
ID U5FXN3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s04700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19728: 15652-17674 , PASA_asmbl_19729: 15678-17054
cDNA
(Sanger)
(ID:Location)		 015_D07.ab1: 15713-16947 , 026_A07.ab1: 15696-16965 , 040_A22.ab1: 15649-17672

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_020 0.0 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
2 Hb_000683_100 0.1180024178 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
3 Hb_010577_010 0.1189499758 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
4 Hb_000016_060 0.1198903482 - - mads box protein, putative [Ricinus communis]
5 Hb_000369_120 0.1332398815 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
6 Hb_002960_130 0.140871403 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
7 Hb_001163_040 0.1552364668 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
8 Hb_000125_020 0.1564949912 transcription factor TF Family: mTERF -
9 Hb_175933_010 0.1570142874 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
10 Hb_010931_140 0.1600881522 - - -
11 Hb_000240_100 0.1604472034 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
12 Hb_001217_010 0.1612298914 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
13 Hb_000125_010 0.1634007359 transcription factor TF Family: mTERF -
14 Hb_000240_120 0.165016859 - - ras-related protein Rab-5B [Reticulomyxa filosa]
15 Hb_001747_030 0.1680402356 - - hypothetical protein F383_08210 [Gossypium arboreum]
16 Hb_002562_110 0.1692084408 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
17 Hb_000340_520 0.1716016579 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
18 Hb_000671_120 0.1716580034 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
19 Hb_011512_050 0.1733667745 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
20 Hb_011037_020 0.1754284504 - - unknown [Picea sitchensis]

Gene co-expression network

sample Hb_001969_020 Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_001969_020--Hb_000683_100 Hb_010577_010 Hb_010577_010 Hb_001969_020--Hb_010577_010 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_000369_120 Hb_000369_120 Hb_001969_020--Hb_000369_120 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_000796_020 Hb_000796_020 Hb_000683_100--Hb_000796_020 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_000016_060--Hb_002960_130 Hb_027760_020 Hb_027760_020 Hb_000369_120--Hb_027760_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_000369_120--Hb_010931_140 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_000369_120--Hb_010577_010 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.2513 20.6899 48.3292 525.656 15.6584 161.716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.892 119.193 122.611 81.1532 75.5099

CAGE analysis