Hb_000074_100

Information

Type -
Description -
Location Contig74: 273737-275076
Sequence    

Annotation

kegg
ID rcu:RCOM_0862220
description hypothetical protein
nr
ID XP_002522884.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SA65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56351: 273491-273743 , PASA_asmbl_56352: 274275-275049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000074_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_350 0.1154709126 - - PREDICTED: protein ABIL1 [Jatropha curcas]
3 Hb_002660_110 0.1325356684 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
4 Hb_000359_290 0.1573154712 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
5 Hb_000002_480 0.1575269702 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
6 Hb_000890_230 0.1605762562 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
7 Hb_000720_080 0.1639515631 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
8 Hb_000004_010 0.1648135812 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
9 Hb_000331_370 0.1670021276 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
10 Hb_005535_080 0.1674714383 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
11 Hb_001609_040 0.1677831603 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
12 Hb_001268_340 0.1698998644 - - Actin, putative [Ricinus communis]
13 Hb_000300_090 0.170995264 - - catalytic, putative [Ricinus communis]
14 Hb_008406_180 0.1721190637 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
15 Hb_000193_300 0.1727557789 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
16 Hb_000008_190 0.1754371407 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
17 Hb_024074_020 0.1758203162 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
18 Hb_000889_100 0.1758248448 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
19 Hb_004126_040 0.1760023216 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019181_030 0.1766654625 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000074_100 Hb_000074_100 Hb_000622_350 Hb_000622_350 Hb_000074_100--Hb_000622_350 Hb_002660_110 Hb_002660_110 Hb_000074_100--Hb_002660_110 Hb_000359_290 Hb_000359_290 Hb_000074_100--Hb_000359_290 Hb_000002_480 Hb_000002_480 Hb_000074_100--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_000074_100--Hb_000890_230 Hb_000720_080 Hb_000720_080 Hb_000074_100--Hb_000720_080 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040 Hb_000072_300 Hb_000072_300 Hb_000359_290--Hb_000072_300 Hb_000796_150 Hb_000796_150 Hb_000359_290--Hb_000796_150 Hb_000140_340 Hb_000140_340 Hb_000359_290--Hb_000140_340 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110 Hb_000331_370 Hb_000331_370 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_012651_010 Hb_012651_010 Hb_000002_480--Hb_012651_010 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000890_230--Hb_000331_370 Hb_000890_230--Hb_012651_010 Hb_000720_080--Hb_000622_350 Hb_000720_080--Hb_000002_480 Hb_000720_080--Hb_000331_370 Hb_000004_010 Hb_000004_010 Hb_000720_080--Hb_000004_010 Hb_000077_290 Hb_000077_290 Hb_000720_080--Hb_000077_290 Hb_000720_080--Hb_004126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9551 11.9836 26.2505 81.3268 9.55138 20.7983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7486 16.9754 6.75674 9.06772 22.6951

CAGE analysis