Hb_000140_340

Information

Type -
Description -
Location Contig140: 334698-339338
Sequence    

Annotation

kegg
ID rcu:RCOM_1617160
description Protein ABIL1, putative
nr
ID XP_012083285.1
description PREDICTED: protein ABIL1 [Jatropha curcas]
swissprot
ID Q8S8M5
description Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=1 SV=1
trembl
ID A0A067K9P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14315 PE=4 SV=1
Gene Ontology
ID GO:0031209
description protein abil1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10856: 334456-339337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_340 0.0 - - PREDICTED: protein ABIL1 [Jatropha curcas]
2 Hb_001876_040 0.0923529473 - - PREDICTED: mucin-5B [Jatropha curcas]
3 Hb_000359_290 0.0942178256 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
4 Hb_000189_480 0.0944340264 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
5 Hb_000796_150 0.0974503377 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
6 Hb_022693_130 0.0979401259 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000212_120 0.0992112563 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
8 Hb_000291_180 0.102455351 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
9 Hb_001157_230 0.102785732 - - Protein AFR, putative [Ricinus communis]
10 Hb_000107_250 0.1053634365 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
11 Hb_024184_010 0.1065045195 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
12 Hb_160271_010 0.1068123136 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
13 Hb_174865_040 0.1087159803 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
14 Hb_005192_010 0.1098498705 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
15 Hb_000922_060 0.1099114912 - - kinesin light chain, putative [Ricinus communis]
16 Hb_022250_010 0.1105320516 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
17 Hb_001029_040 0.1108811567 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
18 Hb_000000_310 0.1118998183 - - metalloendopeptidase, putative [Ricinus communis]
19 Hb_000680_010 0.1121598237 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
20 Hb_003682_070 0.1130721446 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_340 Hb_000140_340 Hb_001876_040 Hb_001876_040 Hb_000140_340--Hb_001876_040 Hb_000359_290 Hb_000359_290 Hb_000140_340--Hb_000359_290 Hb_000189_480 Hb_000189_480 Hb_000140_340--Hb_000189_480 Hb_000796_150 Hb_000796_150 Hb_000140_340--Hb_000796_150 Hb_022693_130 Hb_022693_130 Hb_000140_340--Hb_022693_130 Hb_000212_120 Hb_000212_120 Hb_000140_340--Hb_000212_120 Hb_001157_230 Hb_001157_230 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_000072_300 Hb_000072_300 Hb_000359_290--Hb_000072_300 Hb_000359_290--Hb_000796_150 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110 Hb_001504_030 Hb_001504_030 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000796_150--Hb_000072_300 Hb_000665_180 Hb_000665_180 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_000212_120--Hb_001157_230 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_002883_030 Hb_002883_030 Hb_000212_120--Hb_002883_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6227 12.1161 20.2675 31.3372 8.66858 8.21365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26707 10.6351 8.03985 6.43269 29.4631

CAGE analysis