Hb_002774_120

Information

Type -
Description -
Location Contig2774: 114746-115798
Sequence    

Annotation

kegg
ID tcc:TCM_034930
description hypothetical protein
nr
ID XP_012067844.1
description PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28971: 114451-115805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_120 0.0 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
2 Hb_000363_260 0.1273847088 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_000684_220 0.1362349134 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_006570_090 0.150249886 - - tubulin beta chain, putative [Ricinus communis]
5 Hb_003929_190 0.1515923062 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
6 Hb_179960_010 0.1526660622 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
7 Hb_003540_120 0.1539324418 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000740_090 0.1541445006 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000236_160 0.1543559064 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
10 Hb_002681_120 0.1637323916 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
11 Hb_000963_050 0.1638387068 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
12 Hb_001178_090 0.1639542504 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
13 Hb_001119_070 0.1645995074 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
14 Hb_004958_010 0.1652925729 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006829_070 0.1659429774 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
16 Hb_002003_090 0.1661304982 - - PREDICTED: TPR repeat-containing protein ZIP4 isoform X1 [Jatropha curcas]
17 Hb_002539_050 0.1663580565 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
18 Hb_030685_010 0.1671733009 - - -
19 Hb_012395_050 0.1674211995 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_186247_010 0.1680203018 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002774_120 Hb_002774_120 Hb_000363_260 Hb_000363_260 Hb_002774_120--Hb_000363_260 Hb_000684_220 Hb_000684_220 Hb_002774_120--Hb_000684_220 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_003929_190 Hb_003929_190 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_001119_070 Hb_001119_070 Hb_000363_260--Hb_001119_070 Hb_002681_120 Hb_002681_120 Hb_000363_260--Hb_002681_120 Hb_001450_040 Hb_001450_040 Hb_000363_260--Hb_001450_040 Hb_000363_260--Hb_003929_190 Hb_000077_100 Hb_000077_100 Hb_000363_260--Hb_000077_100 Hb_030565_050 Hb_030565_050 Hb_000684_220--Hb_030565_050 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000330_020 Hb_000330_020 Hb_000684_220--Hb_000330_020 Hb_000603_020 Hb_000603_020 Hb_000684_220--Hb_000603_020 Hb_000236_160 Hb_000236_160 Hb_000684_220--Hb_000236_160 Hb_000049_270 Hb_000049_270 Hb_006570_090--Hb_000049_270 Hb_012807_150 Hb_012807_150 Hb_006570_090--Hb_012807_150 Hb_004007_070 Hb_004007_070 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_006570_090--Hb_000603_020 Hb_000023_110 Hb_000023_110 Hb_006570_090--Hb_000023_110 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_012395_050 Hb_012395_050 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_003540_120--Hb_002681_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64277 3.22191 7.52602 20.7529 0.642149 0.929234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42615 0.299123 0.276194 3.96482 4.68271

CAGE analysis