Hb_002602_030

Information

Type -
Description -
Location Contig2602: 75638-76120
Sequence    

Annotation

kegg
ID rcu:RCOM_0267960
description chaperone protein DNAj, putative
nr
ID XP_012078511.1
description PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYB5
description Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2
trembl
ID A0A067KC86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13188 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27122: 75763-76348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002602_030 0.0 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
2 Hb_000175_470 0.1516546627 - - lactoylglutathione lyase, putative [Ricinus communis]
3 Hb_001148_100 0.158784994 - - -
4 Hb_003813_060 0.1684678771 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001053_210 0.174202061 - - -
6 Hb_002539_040 0.1751713577 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
7 Hb_000062_090 0.1778018518 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
8 Hb_000567_180 0.1813806084 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
9 Hb_005408_070 0.1839406898 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
10 Hb_030992_010 0.1881335081 - - acetylornithine aminotransferase, putative [Ricinus communis]
11 Hb_012362_030 0.1921111962 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
12 Hb_000740_090 0.1938387159 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000110_380 0.1951813606 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
14 Hb_003710_020 0.1985861129 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
15 Hb_147245_010 0.1986996696 - - casein kinase, putative [Ricinus communis]
16 Hb_003207_150 0.1989233766 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
17 Hb_000581_030 0.1996584759 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001143_230 0.199947716 - - beta-galactosidase family protein [Populus trichocarpa]
19 Hb_000940_210 0.2013826755 - - cyclophilin [Hevea brasiliensis]
20 Hb_000062_530 0.2039634529 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]

Gene co-expression network

sample Hb_002602_030 Hb_002602_030 Hb_000175_470 Hb_000175_470 Hb_002602_030--Hb_000175_470 Hb_001148_100 Hb_001148_100 Hb_002602_030--Hb_001148_100 Hb_003813_060 Hb_003813_060 Hb_002602_030--Hb_003813_060 Hb_001053_210 Hb_001053_210 Hb_002602_030--Hb_001053_210 Hb_002539_040 Hb_002539_040 Hb_002602_030--Hb_002539_040 Hb_000062_090 Hb_000062_090 Hb_002602_030--Hb_000062_090 Hb_000175_470--Hb_002539_040 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180 Hb_002781_050 Hb_002781_050 Hb_001148_100--Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_001148_100--Hb_000696_070 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_090 Hb_001148_090 Hb_001148_100--Hb_001148_090 Hb_004223_140 Hb_004223_140 Hb_003813_060--Hb_004223_140 Hb_006711_090 Hb_006711_090 Hb_003813_060--Hb_006711_090 Hb_004032_210 Hb_004032_210 Hb_003813_060--Hb_004032_210 Hb_003894_030 Hb_003894_030 Hb_003813_060--Hb_003894_030 Hb_011828_040 Hb_011828_040 Hb_003813_060--Hb_011828_040 Hb_000940_210 Hb_000940_210 Hb_003813_060--Hb_000940_210 Hb_000740_090 Hb_000740_090 Hb_001053_210--Hb_000740_090 Hb_001053_210--Hb_000940_210 Hb_003430_080 Hb_003430_080 Hb_001053_210--Hb_003430_080 Hb_023226_030 Hb_023226_030 Hb_001053_210--Hb_023226_030 Hb_147245_010 Hb_147245_010 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130 Hb_002539_040--Hb_005408_070 Hb_002539_040--Hb_001148_090 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_002539_040--Hb_001148_100 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50023 6.34248 13.9971 43.7227 1.18999 2.43179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.852871 11.0547 2.62902 14.4859 5.7987

CAGE analysis