Hb_001148_100

Information

Type -
Description -
Location Contig1148: 89806-94314
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04467: 89571-89899 , PASA_asmbl_04468: 89951-90054 , PASA_asmbl_04469: 91796-91914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_100 0.0 - - -
2 Hb_002781_050 0.1179331806 - - cytochrome B5 isoform 1, putative [Ricinus communis]
3 Hb_000696_070 0.1313175109 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
4 Hb_000175_470 0.135350415 - - lactoylglutathione lyase, putative [Ricinus communis]
5 Hb_002151_060 0.1420537959 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
6 Hb_158092_040 0.1477131132 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_001148_090 0.1493839196 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
8 Hb_080477_080 0.1523955156 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
9 Hb_000806_130 0.1551859577 - - Adenosine kinase 2 [Theobroma cacao]
10 Hb_147245_010 0.157014287 - - casein kinase, putative [Ricinus communis]
11 Hb_002602_030 0.158784994 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
12 Hb_005332_040 0.1639953745 - - hypothetical protein RCOM_0530890 [Ricinus communis]
13 Hb_001119_070 0.1644604715 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
14 Hb_002539_040 0.166539145 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
15 Hb_000027_210 0.1676381299 - - Os01g0689300, partial [Oryza sativa Japonica Group]
16 Hb_001369_630 0.1685103248 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
17 Hb_000165_200 0.1719629026 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_004522_030 0.1719710337 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
19 Hb_005408_070 0.1743889288 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
20 Hb_007537_030 0.174567395 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001148_100 Hb_001148_100 Hb_002781_050 Hb_002781_050 Hb_001148_100--Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_090 Hb_001148_090 Hb_001148_100--Hb_001148_090 Hb_002781_050--Hb_000696_070 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_002781_050--Hb_001148_090 Hb_001369_630 Hb_001369_630 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000806_130 Hb_000806_130 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_000696_070--Hb_001369_630 Hb_001486_350 Hb_001486_350 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_002539_040 Hb_002539_040 Hb_000175_470--Hb_002539_040 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180 Hb_002151_060--Hb_000806_130 Hb_002151_060--Hb_000696_070 Hb_002151_060--Hb_001486_350 Hb_002151_060--Hb_002781_050 Hb_000236_190 Hb_000236_190 Hb_002151_060--Hb_000236_190 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_000172_280 Hb_000172_280 Hb_001148_090--Hb_000172_280 Hb_000889_010 Hb_000889_010 Hb_001148_090--Hb_000889_010 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001946_310 Hb_001946_310 Hb_001148_090--Hb_001946_310 Hb_001148_090--Hb_002539_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121659 0.316255 0.901221 2.84785 0.107246 0.0252678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262967 0.516939 0.281029 1.35912 0.727801

CAGE analysis