Hb_001143_230

Information

Type -
Description -
Location Contig1143: 218746-225694
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20280g
description POPTRDRAFT_209993; beta-galactosidase family protein
nr
ID XP_002306647.2
description beta-galactosidase family protein [Populus trichocarpa]
swissprot
ID Q8GX69
description Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2
trembl
ID B9H7H6
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0005s20280g PE=3 SV=2
Gene Ontology
ID GO:0004553
description beta-galactosidase 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04361: 224377-225684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_230 0.0 - - beta-galactosidase family protein [Populus trichocarpa]
2 Hb_005144_170 0.1829609066 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
3 Hb_004117_330 0.1851131779 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002602_030 0.199947716 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
5 Hb_001005_200 0.208778212 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
6 Hb_000413_080 0.2096933299 - - -
7 Hb_000997_380 0.2411131083 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
8 Hb_000236_160 0.2455332784 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
9 Hb_001053_210 0.2507307188 - - -
10 Hb_000363_260 0.251524787 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_066514_010 0.2515404725 - - hypothetical protein RCOM_0204720 [Ricinus communis]
12 Hb_003207_150 0.2522011639 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
13 Hb_008185_020 0.2522573867 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
14 Hb_030992_010 0.2563109703 - - acetylornithine aminotransferase, putative [Ricinus communis]
15 Hb_002272_200 0.2579616545 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
16 Hb_000581_030 0.261026358 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007483_060 0.2620455343 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
18 Hb_000302_100 0.2625040469 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
19 Hb_053709_040 0.2630669775 - - putative actin-97 protein [Linum usitatissimum]
20 Hb_000331_540 0.2637630889 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001143_230 Hb_001143_230 Hb_005144_170 Hb_005144_170 Hb_001143_230--Hb_005144_170 Hb_004117_330 Hb_004117_330 Hb_001143_230--Hb_004117_330 Hb_002602_030 Hb_002602_030 Hb_001143_230--Hb_002602_030 Hb_001005_200 Hb_001005_200 Hb_001143_230--Hb_001005_200 Hb_000413_080 Hb_000413_080 Hb_001143_230--Hb_000413_080 Hb_000997_380 Hb_000997_380 Hb_001143_230--Hb_000997_380 Hb_005144_170--Hb_004117_330 Hb_000191_140 Hb_000191_140 Hb_005144_170--Hb_000191_140 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_002490_030 Hb_002490_030 Hb_005144_170--Hb_002490_030 Hb_005144_170--Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_007575_090 Hb_007575_090 Hb_004117_330--Hb_007575_090 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_000302_100 Hb_000302_100 Hb_004117_330--Hb_000302_100 Hb_066514_010 Hb_066514_010 Hb_004117_330--Hb_066514_010 Hb_000175_470 Hb_000175_470 Hb_002602_030--Hb_000175_470 Hb_001148_100 Hb_001148_100 Hb_002602_030--Hb_001148_100 Hb_003813_060 Hb_003813_060 Hb_002602_030--Hb_003813_060 Hb_001053_210 Hb_001053_210 Hb_002602_030--Hb_001053_210 Hb_002539_040 Hb_002539_040 Hb_002602_030--Hb_002539_040 Hb_000062_090 Hb_000062_090 Hb_002602_030--Hb_000062_090 Hb_004126_040 Hb_004126_040 Hb_001005_200--Hb_004126_040 Hb_014497_040 Hb_014497_040 Hb_001005_200--Hb_014497_040 Hb_000003_310 Hb_000003_310 Hb_001005_200--Hb_000003_310 Hb_000236_160 Hb_000236_160 Hb_001005_200--Hb_000236_160 Hb_000622_350 Hb_000622_350 Hb_001005_200--Hb_000622_350 Hb_000926_340 Hb_000926_340 Hb_001005_200--Hb_000926_340 Hb_002272_200 Hb_002272_200 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_000413_080--Hb_002490_030 Hb_000413_080--Hb_000302_100 Hb_017002_010 Hb_017002_010 Hb_000997_380--Hb_017002_010 Hb_004525_050 Hb_004525_050 Hb_000997_380--Hb_004525_050 Hb_000997_380--Hb_005144_170 Hb_001449_030 Hb_001449_030 Hb_000997_380--Hb_001449_030 Hb_010984_040 Hb_010984_040 Hb_000997_380--Hb_010984_040 Hb_006634_110 Hb_006634_110 Hb_000997_380--Hb_006634_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0730555 0.0363322 0.106013 0.531834 0.039776 0.0308072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116589 0 0.0984152 0.0618936

CAGE analysis