Hb_000011_250

Information

Type -
Description -
Location Contig11: 306072-306905
Sequence    

Annotation

kegg
ID rcu:RCOM_0333360
description RING-H2 finger protein ATL1M, putative
nr
ID XP_012068786.1
description PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
swissprot
ID Q9XF63
description RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1
trembl
ID A0A067KWT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24621 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02992: 306238-307075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_250 0.0 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
2 Hb_001216_060 0.102944787 - - conserved hypothetical protein [Ricinus communis]
3 Hb_025194_070 0.152163711 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
4 Hb_003893_180 0.1531053194 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
5 Hb_003125_110 0.1542182696 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
6 Hb_000497_080 0.1584941249 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005784_050 0.1598109074 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_012395_250 0.166445941 - - hypothetical protein RCOM_1217340 [Ricinus communis]
9 Hb_000963_210 0.1668800636 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_001417_090 0.171460685 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
11 Hb_000614_120 0.1716162942 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
12 Hb_000813_020 0.1764860877 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
13 Hb_000093_010 0.1767153702 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_006351_050 0.1780195323 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
15 Hb_017061_010 0.1785975188 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_013399_060 0.1795690584 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_034713_010 0.1805936825 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
18 Hb_003598_050 0.1806631886 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_001818_010 0.1806675047 - - Disease resistance response protein, putative [Ricinus communis]
20 Hb_000115_200 0.1816343315 - - PREDICTED: endonuclease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_250 Hb_000011_250 Hb_001216_060 Hb_001216_060 Hb_000011_250--Hb_001216_060 Hb_025194_070 Hb_025194_070 Hb_000011_250--Hb_025194_070 Hb_003893_180 Hb_003893_180 Hb_000011_250--Hb_003893_180 Hb_003125_110 Hb_003125_110 Hb_000011_250--Hb_003125_110 Hb_000497_080 Hb_000497_080 Hb_000011_250--Hb_000497_080 Hb_005784_050 Hb_005784_050 Hb_000011_250--Hb_005784_050 Hb_013399_060 Hb_013399_060 Hb_001216_060--Hb_013399_060 Hb_003598_050 Hb_003598_050 Hb_001216_060--Hb_003598_050 Hb_000645_080 Hb_000645_080 Hb_001216_060--Hb_000645_080 Hb_009421_060 Hb_009421_060 Hb_001216_060--Hb_009421_060 Hb_012395_250 Hb_012395_250 Hb_001216_060--Hb_012395_250 Hb_000922_050 Hb_000922_050 Hb_025194_070--Hb_000922_050 Hb_025194_070--Hb_005784_050 Hb_003427_070 Hb_003427_070 Hb_025194_070--Hb_003427_070 Hb_023768_010 Hb_023768_010 Hb_025194_070--Hb_023768_010 Hb_084304_010 Hb_084304_010 Hb_025194_070--Hb_084304_010 Hb_004453_060 Hb_004453_060 Hb_025194_070--Hb_004453_060 Hb_005648_020 Hb_005648_020 Hb_003893_180--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_003893_180--Hb_003466_010 Hb_002918_270 Hb_002918_270 Hb_003893_180--Hb_002918_270 Hb_000093_010 Hb_000093_010 Hb_003893_180--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_003893_180--Hb_002600_120 Hb_002701_030 Hb_002701_030 Hb_003893_180--Hb_002701_030 Hb_080192_010 Hb_080192_010 Hb_003125_110--Hb_080192_010 Hb_003125_110--Hb_005784_050 Hb_000030_230 Hb_000030_230 Hb_003125_110--Hb_000030_230 Hb_000646_040 Hb_000646_040 Hb_003125_110--Hb_000646_040 Hb_003125_110--Hb_001216_060 Hb_006351_050 Hb_006351_050 Hb_000497_080--Hb_006351_050 Hb_000497_080--Hb_003598_050 Hb_003197_050 Hb_003197_050 Hb_000497_080--Hb_003197_050 Hb_180088_010 Hb_180088_010 Hb_000497_080--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_000497_080--Hb_001500_020 Hb_017061_010 Hb_017061_010 Hb_000497_080--Hb_017061_010 Hb_002053_020 Hb_002053_020 Hb_005784_050--Hb_002053_020 Hb_000175_370 Hb_000175_370 Hb_005784_050--Hb_000175_370 Hb_000120_560 Hb_000120_560 Hb_005784_050--Hb_000120_560 Hb_005784_050--Hb_000646_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.685359 1.67498 8.49871 0 0.131207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.552579 0 0.284265 0.911217

CAGE analysis