Hb_080192_010

Information

Type -
Description -
Location Contig80192: 16-3897
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05320g
description hypothetical protein
nr
ID XP_012083827.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID A0A067K0H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14344 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080192_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_003125_110 0.1122640366 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
3 Hb_005784_050 0.1542997326 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_005914_120 0.1610229574 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
5 Hb_000161_140 0.1785282301 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
6 Hb_005542_070 0.1893831025 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
7 Hb_000963_210 0.1955032891 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_001216_060 0.199349491 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002081_160 0.2006581453 - - hypothetical protein OsI_35059 [Oryza sativa Indica Group]
10 Hb_000307_060 0.2040157917 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
11 Hb_000030_230 0.2055512711 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
12 Hb_000011_250 0.2066887014 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
13 Hb_003032_110 0.2077040445 - - -
14 Hb_005305_040 0.2078144997 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
15 Hb_000599_160 0.2079879455 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
16 Hb_000864_050 0.2098436991 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001936_120 0.2105211323 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_115572_010 0.2106974294 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
19 Hb_000000_260 0.2114760596 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
20 Hb_009070_020 0.2120083909 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]

Gene co-expression network

sample Hb_080192_010 Hb_080192_010 Hb_003125_110 Hb_003125_110 Hb_080192_010--Hb_003125_110 Hb_005784_050 Hb_005784_050 Hb_080192_010--Hb_005784_050 Hb_005914_120 Hb_005914_120 Hb_080192_010--Hb_005914_120 Hb_000161_140 Hb_000161_140 Hb_080192_010--Hb_000161_140 Hb_005542_070 Hb_005542_070 Hb_080192_010--Hb_005542_070 Hb_000963_210 Hb_000963_210 Hb_080192_010--Hb_000963_210 Hb_003125_110--Hb_005784_050 Hb_000030_230 Hb_000030_230 Hb_003125_110--Hb_000030_230 Hb_000011_250 Hb_000011_250 Hb_003125_110--Hb_000011_250 Hb_000646_040 Hb_000646_040 Hb_003125_110--Hb_000646_040 Hb_001216_060 Hb_001216_060 Hb_003125_110--Hb_001216_060 Hb_002053_020 Hb_002053_020 Hb_005784_050--Hb_002053_020 Hb_000175_370 Hb_000175_370 Hb_005784_050--Hb_000175_370 Hb_025194_070 Hb_025194_070 Hb_005784_050--Hb_025194_070 Hb_000120_560 Hb_000120_560 Hb_005784_050--Hb_000120_560 Hb_005784_050--Hb_000646_040 Hb_002759_030 Hb_002759_030 Hb_005914_120--Hb_002759_030 Hb_005305_040 Hb_005305_040 Hb_005914_120--Hb_005305_040 Hb_005914_120--Hb_000161_140 Hb_014361_010 Hb_014361_010 Hb_005914_120--Hb_014361_010 Hb_008461_060 Hb_008461_060 Hb_005914_120--Hb_008461_060 Hb_000864_050 Hb_000864_050 Hb_005914_120--Hb_000864_050 Hb_000161_140--Hb_005305_040 Hb_009070_020 Hb_009070_020 Hb_000161_140--Hb_009070_020 Hb_001936_120 Hb_001936_120 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_039946_060 Hb_039946_060 Hb_000161_140--Hb_039946_060 Hb_002781_040 Hb_002781_040 Hb_005542_070--Hb_002781_040 Hb_012368_050 Hb_012368_050 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_000103_070 Hb_000103_070 Hb_005542_070--Hb_000103_070 Hb_002309_020 Hb_002309_020 Hb_000963_210--Hb_002309_020 Hb_000317_380 Hb_000317_380 Hb_000963_210--Hb_000317_380 Hb_002092_060 Hb_002092_060 Hb_000963_210--Hb_002092_060 Hb_000005_290 Hb_000005_290 Hb_000963_210--Hb_000005_290 Hb_002686_220 Hb_002686_220 Hb_000963_210--Hb_002686_220 Hb_001975_110 Hb_001975_110 Hb_000963_210--Hb_001975_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0481614 0.0449142 0.255386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0347154 0 0 0.0715518

CAGE analysis