Hb_000963_210

Information

Type -
Description -
Location Contig963: 169072-170938
Sequence    

Annotation

kegg
ID rcu:RCOM_0155150
description structural constituent of cell wall, putative
nr
ID XP_002530294.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWC5
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_0155150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63836: 168964-169717
cDNA
(Sanger)
(ID:Location)		 032_D08r.ab1: 169013-169626

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_210 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_002309_020 0.1224258332 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
3 Hb_000317_380 0.1260541496 - - Peroxidase 47 precursor, putative [Ricinus communis]
4 Hb_002092_060 0.1300751035 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000005_290 0.132200008 - - Serine carboxypeptidase, putative [Ricinus communis]
6 Hb_002686_220 0.1331433575 - - PREDICTED: expansin-A15-like [Jatropha curcas]
7 Hb_001975_110 0.1360482339 - - -
8 Hb_015175_070 0.1428092756 - - cysteine protease, putative [Ricinus communis]
9 Hb_051212_020 0.1454999511 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
10 Hb_002783_280 0.1463588243 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
11 Hb_006483_070 0.1486282314 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000724_060 0.1493773065 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
13 Hb_000934_120 0.1501288532 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
14 Hb_001775_140 0.1504064204 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
15 Hb_001496_150 0.1516585877 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
16 Hb_000106_010 0.1524081038 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_002783_100 0.1526085183 - - Zeamatin precursor, putative [Ricinus communis]
18 Hb_005295_030 0.1535658028 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
19 Hb_007122_020 0.1536953161 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_001818_010 0.1566721032 - - Disease resistance response protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000963_210 Hb_000963_210 Hb_002309_020 Hb_002309_020 Hb_000963_210--Hb_002309_020 Hb_000317_380 Hb_000317_380 Hb_000963_210--Hb_000317_380 Hb_002092_060 Hb_002092_060 Hb_000963_210--Hb_002092_060 Hb_000005_290 Hb_000005_290 Hb_000963_210--Hb_000005_290 Hb_002686_220 Hb_002686_220 Hb_000963_210--Hb_002686_220 Hb_001975_110 Hb_001975_110 Hb_000963_210--Hb_001975_110 Hb_002309_020--Hb_002092_060 Hb_002309_020--Hb_000005_290 Hb_015175_070 Hb_015175_070 Hb_002309_020--Hb_015175_070 Hb_002309_020--Hb_001975_110 Hb_005295_030 Hb_005295_030 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_002783_100 Hb_002783_100 Hb_000317_380--Hb_002783_100 Hb_000317_380--Hb_002092_060 Hb_000317_380--Hb_001975_110 Hb_000317_380--Hb_002309_020 Hb_000317_380--Hb_015175_070 Hb_000317_380--Hb_000005_290 Hb_002092_060--Hb_015175_070 Hb_002092_060--Hb_005295_030 Hb_002092_060--Hb_000005_290 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_000005_290--Hb_001975_110 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_004899_230 Hb_004899_230 Hb_000005_290--Hb_004899_230 Hb_000005_290--Hb_002783_100 Hb_112950_010 Hb_112950_010 Hb_002686_220--Hb_112950_010 Hb_006153_140 Hb_006153_140 Hb_002686_220--Hb_006153_140 Hb_003598_050 Hb_003598_050 Hb_002686_220--Hb_003598_050 Hb_009079_020 Hb_009079_020 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_002686_220--Hb_015175_070 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_001975_110--Hb_002783_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.034577 0.219541 0.754956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0339428 0 0 0.140076

CAGE analysis