Hb_005914_120

Information

Type -
Description -
Location Contig5914: 72888-77209
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07750g
description POPTRDRAFT_229877; hypothetical protein
nr
ID XP_012069897.1
description PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
swissprot
ID F4IVU1
description Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1
trembl
ID B9HSS9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07750g PE=4 SV=2
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 2b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50240: 75378-76256 , PASA_asmbl_50246: 72132-77161 , PASA_asmbl_50247: 72132-77161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_120 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
2 Hb_002759_030 0.1352399603 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
3 Hb_005305_040 0.1430335102 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
4 Hb_000161_140 0.1518826778 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
5 Hb_014361_010 0.1554774958 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
6 Hb_008461_060 0.1581024798 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
7 Hb_000864_050 0.1582511936 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000302_320 0.1584566019 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
9 Hb_000358_060 0.1589641638 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
10 Hb_000094_170 0.1608622443 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
11 Hb_080192_010 0.1610229574 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_000928_200 0.1630992679 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
13 Hb_004225_120 0.1635163271 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
14 Hb_009070_020 0.166166063 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
15 Hb_135052_010 0.1684660705 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_005614_020 0.1720882158 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
17 Hb_001936_120 0.1734617562 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_001225_050 0.1736922361 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
19 Hb_001001_070 0.1738281766 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
20 Hb_000780_180 0.1749658404 - - PREDICTED: uncharacterized protein LOC105641547 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_120 Hb_005914_120 Hb_002759_030 Hb_002759_030 Hb_005914_120--Hb_002759_030 Hb_005305_040 Hb_005305_040 Hb_005914_120--Hb_005305_040 Hb_000161_140 Hb_000161_140 Hb_005914_120--Hb_000161_140 Hb_014361_010 Hb_014361_010 Hb_005914_120--Hb_014361_010 Hb_008461_060 Hb_008461_060 Hb_005914_120--Hb_008461_060 Hb_000864_050 Hb_000864_050 Hb_005914_120--Hb_000864_050 Hb_002759_030--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_002759_030--Hb_014361_010 Hb_000457_120 Hb_000457_120 Hb_002759_030--Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_002759_030--Hb_000928_200 Hb_001001_070 Hb_001001_070 Hb_002759_030--Hb_001001_070 Hb_005305_040--Hb_000161_140 Hb_001936_120 Hb_001936_120 Hb_005305_040--Hb_001936_120 Hb_005305_040--Hb_000928_200 Hb_005305_040--Hb_000457_120 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_009070_020 Hb_009070_020 Hb_000161_140--Hb_009070_020 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_039946_060 Hb_039946_060 Hb_000161_140--Hb_039946_060 Hb_014361_010--Hb_000864_050 Hb_014361_010--Hb_005305_040 Hb_004957_050 Hb_004957_050 Hb_014361_010--Hb_004957_050 Hb_014361_010--Hb_001195_710 Hb_014361_010--Hb_001001_070 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_008461_060--Hb_001001_070 Hb_133492_010 Hb_133492_010 Hb_000864_050--Hb_133492_010 Hb_000599_160 Hb_000599_160 Hb_000864_050--Hb_000599_160 Hb_180980_010 Hb_180980_010 Hb_000864_050--Hb_180980_010 Hb_002171_050 Hb_002171_050 Hb_000864_050--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000864_050--Hb_004625_020 Hb_000864_050--Hb_001936_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.682854 14.5561 16.9102 122.557 0.802962 0.0755689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039278 9.94894 1.15112 0.630921 60.3887

CAGE analysis