Hb_000413_080

Information

Type -
Description -
Location Contig413: 75074-76193
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_080 0.0 - - -
2 Hb_004117_330 0.1542537782 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002272_200 0.171582062 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
4 Hb_000011_250 0.1820654008 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
5 Hb_002490_030 0.1836858899 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000302_100 0.1887255845 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_005144_170 0.1893627783 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
8 Hb_000563_140 0.1977928819 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_002894_070 0.2000510513 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
10 Hb_122940_010 0.2001150069 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
11 Hb_104571_010 0.2017423864 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
12 Hb_123301_010 0.2021312052 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003536_090 0.202717081 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_003226_130 0.2029710985 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
15 Hb_000313_280 0.2031219592 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
16 Hb_000260_110 0.2038804707 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
17 Hb_003813_010 0.2069586127 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
18 Hb_025194_070 0.2069623195 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
19 Hb_002602_030 0.2072366002 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
20 Hb_007382_130 0.207258676 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000413_080 Hb_000413_080 Hb_004117_330 Hb_004117_330 Hb_000413_080--Hb_004117_330 Hb_002272_200 Hb_002272_200 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_002490_030 Hb_002490_030 Hb_000413_080--Hb_002490_030 Hb_000302_100 Hb_000302_100 Hb_000413_080--Hb_000302_100 Hb_005144_170 Hb_005144_170 Hb_000413_080--Hb_005144_170 Hb_007575_090 Hb_007575_090 Hb_004117_330--Hb_007575_090 Hb_004117_330--Hb_005144_170 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_004117_330--Hb_000302_100 Hb_066514_010 Hb_066514_010 Hb_004117_330--Hb_066514_010 Hb_002272_200--Hb_002490_030 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_002272_200--Hb_066514_010 Hb_002272_200--Hb_000302_100 Hb_001216_060 Hb_001216_060 Hb_000011_250--Hb_001216_060 Hb_025194_070 Hb_025194_070 Hb_000011_250--Hb_025194_070 Hb_003893_180 Hb_003893_180 Hb_000011_250--Hb_003893_180 Hb_003125_110 Hb_003125_110 Hb_000011_250--Hb_003125_110 Hb_000497_080 Hb_000497_080 Hb_000011_250--Hb_000497_080 Hb_005784_050 Hb_005784_050 Hb_000011_250--Hb_005784_050 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_002490_030--Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_000191_140 Hb_000191_140 Hb_005144_170--Hb_000191_140 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_005144_170--Hb_002490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391735 1.73159 2.0679 12.1053 0.189201 0.247247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115771 1.63879 0.0831632 0.862793 0.92369

CAGE analysis