Hb_004525_050

Information

Type -
Description -
Location Contig4525: 26662-28071
Sequence    

Annotation

kegg
ID mdm:103432285
description polyol transporter 5-like
nr
ID AAR09957.1
description similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
swissprot
ID Q9XST2
description Solute carrier family 2, facilitated glucose transporter member 4 (Fragment) OS=Canis familiaris GN=SLC2A4 PE=2 SV=1
trembl
ID M0UDQ0
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0016020
description sugar transporter erd6-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43222: 22185-44706 , PASA_asmbl_43229: 24119-30010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_050 0.0 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
2 Hb_010984_040 0.151252423 - - hypothetical protein M569_17286, partial [Genlisea aurea]
3 Hb_002760_050 0.1637803164 - - conserved hypothetical protein [Ricinus communis]
4 Hb_048702_010 0.1847475471 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
5 Hb_100137_010 0.1923953238 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
6 Hb_006634_110 0.1927493161 - - BnaC04g40780D [Brassica napus]
7 Hb_000950_030 0.2018696129 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
8 Hb_000997_380 0.2040977986 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
9 Hb_001449_030 0.2085364126 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
10 Hb_001059_140 0.2127624298 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
11 Hb_188313_010 0.2187315392 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_122636_010 0.2188922 - - dienelactone hydrolase family protein [Populus trichocarpa]
13 Hb_184541_010 0.2221943588 - - PREDICTED: selT-like protein [Jatropha curcas]
14 Hb_003642_020 0.2276430004 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
15 Hb_004079_050 0.2282339714 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
16 Hb_017002_010 0.2286311646 - - PREDICTED: expansin-A15-like [Jatropha curcas]
17 Hb_002920_010 0.232494031 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
18 Hb_009083_030 0.2337352764 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
19 Hb_017014_020 0.2338334506 - - -
20 Hb_001217_010 0.2391297784 - - hypothetical protein JCGZ_04022 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_050 Hb_004525_050 Hb_010984_040 Hb_010984_040 Hb_004525_050--Hb_010984_040 Hb_002760_050 Hb_002760_050 Hb_004525_050--Hb_002760_050 Hb_048702_010 Hb_048702_010 Hb_004525_050--Hb_048702_010 Hb_100137_010 Hb_100137_010 Hb_004525_050--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_004525_050--Hb_006634_110 Hb_000950_030 Hb_000950_030 Hb_004525_050--Hb_000950_030 Hb_010984_040--Hb_100137_010 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_002760_050--Hb_100137_010 Hb_001217_010 Hb_001217_010 Hb_002760_050--Hb_001217_010 Hb_001999_100 Hb_001999_100 Hb_002760_050--Hb_001999_100 Hb_122636_010 Hb_122636_010 Hb_002760_050--Hb_122636_010 Hb_000291_160 Hb_000291_160 Hb_002760_050--Hb_000291_160 Hb_002660_110 Hb_002660_110 Hb_002760_050--Hb_002660_110 Hb_048702_010--Hb_006634_110 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_100137_010--Hb_122636_010 Hb_100137_010--Hb_001217_010 Hb_006634_110--Hb_122636_010 Hb_006634_110--Hb_100137_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130 Hb_002157_270 Hb_002157_270 Hb_000950_030--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_000950_030--Hb_006634_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251917 0.124431 0.209091 3.98512 0.193068 0.831835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.459958 0.240866 0 0.454355 0.883659

CAGE analysis