Hb_002760_050

Information

Type -
Description -
Location Contig2760: 69864-70202
Sequence    

Annotation

kegg
ID rcu:RCOM_1372180
description hypothetical protein
nr
ID XP_002531450.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002760_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_100137_010 0.1394953825 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
3 Hb_001217_010 0.1441420537 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
4 Hb_001999_100 0.1447639395 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
5 Hb_122636_010 0.1484888053 - - dienelactone hydrolase family protein [Populus trichocarpa]
6 Hb_000291_160 0.1541033316 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
7 Hb_002660_110 0.1555049397 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
8 Hb_148130_020 0.163618166 - - -
9 Hb_004525_050 0.1637803164 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
10 Hb_006634_110 0.1680770369 - - BnaC04g40780D [Brassica napus]
11 Hb_011942_060 0.1705286402 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
12 Hb_048702_010 0.1838190302 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
13 Hb_000720_080 0.1843272238 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
14 Hb_003071_070 0.1901897859 - - sucrose synthase 3 [Hevea brasiliensis]
15 Hb_000008_190 0.1902067131 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
16 Hb_002129_020 0.1909111225 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
17 Hb_003052_180 0.1913819579 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
18 Hb_010984_040 0.1947319887 - - hypothetical protein M569_17286, partial [Genlisea aurea]
19 Hb_000311_040 0.1949063219 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
20 Hb_026740_020 0.1959543955 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_002760_050 Hb_002760_050 Hb_100137_010 Hb_100137_010 Hb_002760_050--Hb_100137_010 Hb_001217_010 Hb_001217_010 Hb_002760_050--Hb_001217_010 Hb_001999_100 Hb_001999_100 Hb_002760_050--Hb_001999_100 Hb_122636_010 Hb_122636_010 Hb_002760_050--Hb_122636_010 Hb_000291_160 Hb_000291_160 Hb_002760_050--Hb_000291_160 Hb_002660_110 Hb_002660_110 Hb_002760_050--Hb_002660_110 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_100137_010--Hb_122636_010 Hb_100137_010--Hb_001217_010 Hb_001217_010--Hb_122636_010 Hb_188313_010 Hb_188313_010 Hb_001217_010--Hb_188313_010 Hb_000125_020 Hb_000125_020 Hb_001217_010--Hb_000125_020 Hb_001217_010--Hb_000291_160 Hb_001481_150 Hb_001481_150 Hb_001999_100--Hb_001481_150 Hb_006569_060 Hb_006569_060 Hb_001999_100--Hb_006569_060 Hb_001999_100--Hb_002660_110 Hb_033152_070 Hb_033152_070 Hb_001999_100--Hb_033152_070 Hb_000008_190 Hb_000008_190 Hb_001999_100--Hb_000008_190 Hb_026740_020 Hb_026740_020 Hb_001999_100--Hb_026740_020 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_000291_160--Hb_002660_110 Hb_000739_200 Hb_000739_200 Hb_000291_160--Hb_000739_200 Hb_000291_160--Hb_026740_020 Hb_000291_160--Hb_001999_100 Hb_183610_010 Hb_183610_010 Hb_000291_160--Hb_183610_010 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_000622_350 Hb_000622_350 Hb_002660_110--Hb_000622_350 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48913 2.95333 1.21389 30.4017 2.78595 4.61905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64429 3.7464 1.32814 4.84346 6.89006

CAGE analysis