Hb_188313_010

Information

Type -
Description -
Location Contig188313: 3-933
Sequence    

Annotation

kegg
ID pmum:103329306
description carboxymethylenebutenolidase homolog
nr
ID XP_012087598.1
description PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5X621
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009589mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description carboxymethylenebutenolidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188313_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
2 Hb_182713_020 0.1105390546 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
3 Hb_009083_030 0.1154898874 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
4 Hb_001247_030 0.1250216313 - - -
5 Hb_184541_010 0.1267309714 - - PREDICTED: selT-like protein [Jatropha curcas]
6 Hb_001217_010 0.1420715464 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
7 Hb_100137_010 0.1460353955 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
8 Hb_004125_070 0.1561317267 - - Glycolipid transfer protein, putative [Ricinus communis]
9 Hb_008185_020 0.1591538089 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
10 Hb_017014_020 0.1651455389 - - -
11 Hb_013394_100 0.1709689903 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
12 Hb_034507_040 0.1725907774 - - peptide transporter, putative [Ricinus communis]
13 Hb_099298_010 0.1748377406 - - -
14 Hb_006162_020 0.1785490754 - - -
15 Hb_011287_040 0.1829920128 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
16 Hb_006634_110 0.186906778 - - BnaC04g40780D [Brassica napus]
17 Hb_022614_010 0.1875231816 - - -
18 Hb_089202_010 0.1879056415 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
19 Hb_011918_010 0.1899610715 - - hypothetical protein glysoja_041948 [Glycine soja]
20 Hb_122636_010 0.1919947511 - - dienelactone hydrolase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_188313_010 Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_009083_030 Hb_009083_030 Hb_188313_010--Hb_009083_030 Hb_001247_030 Hb_001247_030 Hb_188313_010--Hb_001247_030 Hb_184541_010 Hb_184541_010 Hb_188313_010--Hb_184541_010 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_188313_010--Hb_100137_010 Hb_013394_100 Hb_013394_100 Hb_182713_020--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_182713_020--Hb_009083_030 Hb_073799_010 Hb_073799_010 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040 Hb_009083_030--Hb_100137_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_004125_070 Hb_004125_070 Hb_001247_030--Hb_004125_070 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_184541_010--Hb_004125_070 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_100137_010 Hb_122636_010 Hb_122636_010 Hb_001217_010--Hb_122636_010 Hb_001217_010--Hb_100137_010 Hb_002760_050 Hb_002760_050 Hb_001217_010--Hb_002760_050 Hb_000125_020 Hb_000125_020 Hb_001217_010--Hb_000125_020 Hb_000291_160 Hb_000291_160 Hb_001217_010--Hb_000291_160 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_100137_010--Hb_122636_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2716 21.2842 21.7411 367.2 19.8588 98.9416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2257 42.653 22.3044 26.3695 20.11

CAGE analysis