Hb_011287_040

Information

Type -
Description -
Location Contig11287: 35225-37077
Sequence    

Annotation

kegg
ID rcu:RCOM_1080920
description OTU domain-containing protein 6B, putative
nr
ID XP_012085651.1
description PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID A0A067JVG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_040 0.0 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
2 Hb_182713_020 0.1518748654 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
3 Hb_001518_070 0.1710809936 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008185_020 0.1715466254 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
5 Hb_000053_030 0.1739428689 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
6 Hb_073799_010 0.1777343178 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013394_100 0.1778765071 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
8 Hb_178620_010 0.1780621756 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
9 Hb_188313_010 0.1829920128 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
10 Hb_002388_010 0.183618858 - - -
11 Hb_010964_020 0.1895334208 - - RNA helicase [Arabidopsis thaliana]
12 Hb_000311_030 0.191175235 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
13 Hb_034507_040 0.1931017709 - - peptide transporter, putative [Ricinus communis]
14 Hb_004525_080 0.2024640961 - - Sugar transporter ERD6-like 6 [Morus notabilis]
15 Hb_000281_060 0.2025008251 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_000111_030 0.2036783157 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
17 Hb_002192_090 0.2039072362 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
18 Hb_000174_050 0.2044176673 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
19 Hb_000004_010 0.204985257 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
20 Hb_000311_040 0.205363084 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]

Gene co-expression network

sample Hb_011287_040 Hb_011287_040 Hb_182713_020 Hb_182713_020 Hb_011287_040--Hb_182713_020 Hb_001518_070 Hb_001518_070 Hb_011287_040--Hb_001518_070 Hb_008185_020 Hb_008185_020 Hb_011287_040--Hb_008185_020 Hb_000053_030 Hb_000053_030 Hb_011287_040--Hb_000053_030 Hb_073799_010 Hb_073799_010 Hb_011287_040--Hb_073799_010 Hb_013394_100 Hb_013394_100 Hb_011287_040--Hb_013394_100 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_182713_020--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_182713_020--Hb_000111_030 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_182713_020--Hb_073799_010 Hb_002192_090 Hb_002192_090 Hb_001518_070--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_001518_070--Hb_133724_010 Hb_001518_070--Hb_000053_030 Hb_010964_020 Hb_010964_020 Hb_001518_070--Hb_010964_020 Hb_002388_010 Hb_002388_010 Hb_001518_070--Hb_002388_010 Hb_001518_070--Hb_000111_030 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_011918_010 Hb_011918_010 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_000053_030--Hb_099878_050 Hb_073799_010--Hb_002388_010 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_073799_010--Hb_013394_100 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76279 0.421335 2.00666 11.5417 1.71311 3.73214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25318 1.42201 0.368896 0.50128 0.406921

CAGE analysis