Hb_011942_010

Information

Type -
Description -
Location Contig11942: 12970-13257
Sequence    

Annotation

kegg
ID rcu:RCOM_1442830
description hypothetical protein
nr
ID XP_002512767.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGQ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05739: 12796-16002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_130613_010 0.1462749238 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
3 Hb_073799_010 0.1540157251 - - conserved hypothetical protein [Ricinus communis]
4 Hb_133724_010 0.1554076193 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002388_010 0.1593631496 - - -
6 Hb_000733_100 0.1612780871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001518_070 0.16202615 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002192_090 0.1695832787 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
9 Hb_000111_030 0.1751169348 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
10 Hb_001545_050 0.1970117856 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
11 Hb_182713_020 0.2034325072 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
12 Hb_009620_100 0.2045272155 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
13 Hb_146675_010 0.207475726 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
14 Hb_005686_120 0.2084224642 - - -
15 Hb_001747_030 0.209598719 - - hypothetical protein F383_08210 [Gossypium arboreum]
16 Hb_000363_330 0.2136786039 - - -
17 Hb_013394_100 0.2144593671 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
18 Hb_001195_410 0.2147947507 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
19 Hb_000481_050 0.2148316002 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
20 Hb_066913_010 0.2171163985 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]

Gene co-expression network

sample Hb_011942_010 Hb_011942_010 Hb_130613_010 Hb_130613_010 Hb_011942_010--Hb_130613_010 Hb_073799_010 Hb_073799_010 Hb_011942_010--Hb_073799_010 Hb_133724_010 Hb_133724_010 Hb_011942_010--Hb_133724_010 Hb_002388_010 Hb_002388_010 Hb_011942_010--Hb_002388_010 Hb_000733_100 Hb_000733_100 Hb_011942_010--Hb_000733_100 Hb_001518_070 Hb_001518_070 Hb_011942_010--Hb_001518_070 Hb_000111_030 Hb_000111_030 Hb_130613_010--Hb_000111_030 Hb_130613_010--Hb_133724_010 Hb_011671_480 Hb_011671_480 Hb_130613_010--Hb_011671_480 Hb_000363_330 Hb_000363_330 Hb_130613_010--Hb_000363_330 Hb_001911_040 Hb_001911_040 Hb_130613_010--Hb_001911_040 Hb_005686_120 Hb_005686_120 Hb_130613_010--Hb_005686_120 Hb_073799_010--Hb_002388_010 Hb_182713_020 Hb_182713_020 Hb_073799_010--Hb_182713_020 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_013394_100 Hb_013394_100 Hb_073799_010--Hb_013394_100 Hb_011287_040 Hb_011287_040 Hb_073799_010--Hb_011287_040 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_133724_010--Hb_002388_010 Hb_099878_050 Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_133724_010--Hb_001518_070 Hb_002388_010--Hb_000111_030 Hb_002388_010--Hb_002192_090 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_000733_100--Hb_130613_010 Hb_040747_010 Hb_040747_010 Hb_000733_100--Hb_040747_010 Hb_000733_100--Hb_000363_330 Hb_169505_010 Hb_169505_010 Hb_000733_100--Hb_169505_010 Hb_000733_100--Hb_002388_010 Hb_001518_070--Hb_002192_090 Hb_000053_030 Hb_000053_030 Hb_001518_070--Hb_000053_030 Hb_010964_020 Hb_010964_020 Hb_001518_070--Hb_010964_020 Hb_001518_070--Hb_002388_010 Hb_001518_070--Hb_000111_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2536 40.0137 82.9929 191.835 13.1778 97.9901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8655 82.6465 21.4377 8.09511 7.90478

CAGE analysis