Hb_169505_010

Information

Type -
Description -
Location Contig169505: 813-1976
Sequence    

Annotation

kegg
ID rcu:RCOM_1595690
description NAD dependent epimerase/dehydratase, putative
nr
ID KDP38555.1
description hypothetical protein JCGZ_04480 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L238
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04480 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein yeez

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169505_010 0.0 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
2 Hb_041025_010 0.1794494126 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
3 Hb_035436_010 0.1806061152 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
4 Hb_178620_010 0.1885676011 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
5 Hb_040747_010 0.1944319779 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
6 Hb_001518_070 0.1954913757 - - conserved hypothetical protein [Ricinus communis]
7 Hb_133724_010 0.1988881543 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025905_020 0.2033421387 - - major allergen Pru ar 1-like [Jatropha curcas]
9 Hb_114079_010 0.2056736154 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
10 Hb_013358_100 0.2072366797 - - unknown [Medicago truncatula]
11 Hb_010964_020 0.211232559 - - RNA helicase [Arabidopsis thaliana]
12 Hb_002388_010 0.2130747521 - - -
13 Hb_181441_010 0.2130940938 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
14 Hb_070469_010 0.215382711 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
15 Hb_177152_010 0.2157591891 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
16 Hb_002192_090 0.2169280378 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
17 Hb_146675_010 0.2175850916 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
18 Hb_000082_020 0.2177223144 - - -
19 Hb_099878_050 0.2206424934 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
20 Hb_000317_140 0.2212390241 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_169505_010 Hb_169505_010 Hb_041025_010 Hb_041025_010 Hb_169505_010--Hb_041025_010 Hb_035436_010 Hb_035436_010 Hb_169505_010--Hb_035436_010 Hb_178620_010 Hb_178620_010 Hb_169505_010--Hb_178620_010 Hb_040747_010 Hb_040747_010 Hb_169505_010--Hb_040747_010 Hb_001518_070 Hb_001518_070 Hb_169505_010--Hb_001518_070 Hb_133724_010 Hb_133724_010 Hb_169505_010--Hb_133724_010 Hb_000082_020 Hb_000082_020 Hb_041025_010--Hb_000082_020 Hb_046120_010 Hb_046120_010 Hb_041025_010--Hb_046120_010 Hb_114079_010 Hb_114079_010 Hb_041025_010--Hb_114079_010 Hb_183522_010 Hb_183522_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_013358_100 Hb_013358_100 Hb_035436_010--Hb_013358_100 Hb_035436_010--Hb_010964_020 Hb_177152_010 Hb_177152_010 Hb_035436_010--Hb_177152_010 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_178620_010--Hb_010964_020 Hb_068569_010 Hb_068569_010 Hb_178620_010--Hb_068569_010 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_178620_010--Hb_013358_100 Hb_002192_090 Hb_002192_090 Hb_178620_010--Hb_002192_090 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_001518_070--Hb_002192_090 Hb_001518_070--Hb_133724_010 Hb_000053_030 Hb_000053_030 Hb_001518_070--Hb_000053_030 Hb_001518_070--Hb_010964_020 Hb_001518_070--Hb_002388_010 Hb_000111_030 Hb_000111_030 Hb_001518_070--Hb_000111_030 Hb_133724_010--Hb_002192_090 Hb_133724_010--Hb_002388_010 Hb_099878_050 Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09872 3.80018 5.62351 12.8514 0.847308 12.737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53072 2.60629 0 1.06293 1.34529

CAGE analysis