Hb_025905_020

Information

Type -
Description -
Location Contig25905: 7360-11224
Sequence    

Annotation

kegg
ID -
description -
nr
ID NP_001295743.1
description major allergen Pru ar 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D2D960
description Major allergen Pru ar 1-like protein OS=Jatropha curcas GN=JCGZ_18949 PE=2 SV=1
Gene Ontology
ID GO:0006952
description major allergen pru ar 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025905_020 0.0 - - major allergen Pru ar 1-like [Jatropha curcas]
2 Hb_010964_020 0.1499939082 - - RNA helicase [Arabidopsis thaliana]
3 Hb_178620_010 0.1509081678 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
4 Hb_134488_010 0.157652047 - - -
5 Hb_114079_010 0.1784574237 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
6 Hb_035436_010 0.1785670188 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
7 Hb_041025_010 0.1890003786 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
8 Hb_000082_020 0.1961672997 - - -
9 Hb_000429_250 0.1975662749 - - hypothetical protein L484_000744 [Morus notabilis]
10 Hb_060054_010 0.2003817475 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
11 Hb_169505_010 0.2033421387 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
12 Hb_177152_010 0.2056459669 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
13 Hb_013358_100 0.2059187789 - - unknown [Medicago truncatula]
14 Hb_068569_010 0.2060280068 - - -
15 Hb_001231_070 0.2062053341 - - -
16 Hb_001623_300 0.2084123951 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
17 Hb_001623_290 0.2085941104 - - unknown [Populus trichocarpa]
18 Hb_112047_010 0.2089528413 - - -
19 Hb_169329_010 0.2153635045 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
20 Hb_183522_010 0.2188795242 - - Far upstream element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_025905_020 Hb_025905_020 Hb_010964_020 Hb_010964_020 Hb_025905_020--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_025905_020--Hb_178620_010 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_035436_010 Hb_035436_010 Hb_025905_020--Hb_035436_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_178620_010--Hb_068569_010 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_013358_100 Hb_013358_100 Hb_178620_010--Hb_013358_100 Hb_178620_010--Hb_002192_090 Hb_068804_080 Hb_068804_080 Hb_134488_010--Hb_068804_080 Hb_177152_010 Hb_177152_010 Hb_134488_010--Hb_177152_010 Hb_169329_010 Hb_169329_010 Hb_134488_010--Hb_169329_010 Hb_134488_010--Hb_041025_010 Hb_134488_010--Hb_178620_010 Hb_000082_020 Hb_000082_020 Hb_114079_010--Hb_000082_020 Hb_183522_010 Hb_183522_010 Hb_114079_010--Hb_183522_010 Hb_114079_010--Hb_041025_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_114079_010--Hb_010964_020 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_035436_010--Hb_013358_100 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_177152_010 Hb_035436_010--Hb_178620_010 Hb_041025_010--Hb_000082_020 Hb_046120_010 Hb_046120_010 Hb_041025_010--Hb_046120_010 Hb_041025_010--Hb_183522_010 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.2509 43.7783 38.0413 176.443 21.1247 204.319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7374 22.5499 7.85253 4.18063 0

CAGE analysis