Hb_068804_080

Information

Type -
Description -
Location Contig68804: 50505-50898
Sequence    

Annotation

kegg
ID rcu:RCOM_0230700
description Protein BRICK1, putative
nr
ID XP_012079533.1
description PREDICTED: protein BRICK 1 [Jatropha curcas]
swissprot
ID Q94JY4
description Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1
trembl
ID A0A067K7T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12628 PE=4 SV=1
Gene Ontology
ID GO:0005856
description protein brick 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54123: 50661-50979 , PASA_asmbl_54124: 51482-62609 , PASA_asmbl_54125: 51482-62609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_080 0.0 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
2 Hb_134488_010 0.1779364679 - - -
3 Hb_160203_010 0.2153137185 - - -
4 Hb_103790_010 0.2175671034 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
5 Hb_007136_020 0.2176023642 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
6 Hb_004570_050 0.2195918474 - - kinase, putative [Ricinus communis]
7 Hb_182249_010 0.2272010127 - - -
8 Hb_124961_010 0.2288489763 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
9 Hb_170532_010 0.2301527354 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
10 Hb_169505_010 0.232583787 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
11 Hb_025905_020 0.2396982111 - - major allergen Pru ar 1-like [Jatropha curcas]
12 Hb_000589_060 0.2422252896 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
13 Hb_076233_020 0.2444335119 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
14 Hb_011932_010 0.2487002832 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
15 Hb_000179_180 0.2490778963 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
16 Hb_040747_010 0.2553313976 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
17 Hb_000429_250 0.2575615863 - - hypothetical protein L484_000744 [Morus notabilis]
18 Hb_070469_010 0.2621251151 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
19 Hb_001005_150 0.2632947314 - - -
20 Hb_169329_010 0.2653506407 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_068804_080 Hb_068804_080 Hb_134488_010 Hb_134488_010 Hb_068804_080--Hb_134488_010 Hb_160203_010 Hb_160203_010 Hb_068804_080--Hb_160203_010 Hb_103790_010 Hb_103790_010 Hb_068804_080--Hb_103790_010 Hb_007136_020 Hb_007136_020 Hb_068804_080--Hb_007136_020 Hb_004570_050 Hb_004570_050 Hb_068804_080--Hb_004570_050 Hb_182249_010 Hb_182249_010 Hb_068804_080--Hb_182249_010 Hb_025905_020 Hb_025905_020 Hb_134488_010--Hb_025905_020 Hb_177152_010 Hb_177152_010 Hb_134488_010--Hb_177152_010 Hb_169329_010 Hb_169329_010 Hb_134488_010--Hb_169329_010 Hb_041025_010 Hb_041025_010 Hb_134488_010--Hb_041025_010 Hb_178620_010 Hb_178620_010 Hb_134488_010--Hb_178620_010 Hb_000996_180 Hb_000996_180 Hb_160203_010--Hb_000996_180 Hb_000152_670 Hb_000152_670 Hb_160203_010--Hb_000152_670 Hb_015354_010 Hb_015354_010 Hb_160203_010--Hb_015354_010 Hb_170532_010 Hb_170532_010 Hb_160203_010--Hb_170532_010 Hb_002783_010 Hb_002783_010 Hb_160203_010--Hb_002783_010 Hb_124961_010 Hb_124961_010 Hb_160203_010--Hb_124961_010 Hb_006541_090 Hb_006541_090 Hb_103790_010--Hb_006541_090 Hb_000264_290 Hb_000264_290 Hb_103790_010--Hb_000264_290 Hb_103790_010--Hb_160203_010 Hb_103790_010--Hb_007136_020 Hb_001300_050 Hb_001300_050 Hb_103790_010--Hb_001300_050 Hb_007136_020--Hb_124961_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_007136_020--Hb_101020_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_004570_050--Hb_170532_010 Hb_004570_050--Hb_124961_010 Hb_004570_050--Hb_006816_340 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_004052_160 Hb_004052_160 Hb_182249_010--Hb_004052_160 Hb_000122_010 Hb_000122_010 Hb_182249_010--Hb_000122_010 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_009393_200 Hb_009393_200 Hb_182249_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43549 5.19839 7.17983 6.43746 1.58169 12.0925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83192 1.45284 0 0 0

CAGE analysis