Hb_160203_010

Information

Type -
Description -
Location Contig160203: 3-368
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160203_010 0.0 - - -
2 Hb_000996_180 0.1709100081 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
3 Hb_000152_670 0.1823593987 - - hypothetical protein VITISV_037603 [Vitis vinifera]
4 Hb_015354_010 0.1839539459 - - PREDICTED: B2 protein [Jatropha curcas]
5 Hb_170532_010 0.1988475062 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_002783_010 0.2061454625 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
7 Hb_124961_010 0.2067245865 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
8 Hb_068804_080 0.2153137185 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
9 Hb_007136_020 0.2189905318 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
10 Hb_033642_100 0.219860295 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
11 Hb_156526_010 0.22347637 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
12 Hb_001052_040 0.2241809043 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
13 Hb_003038_220 0.2274504534 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
14 Hb_116638_010 0.2275601887 - - conserved hypothetical protein [Ricinus communis]
15 Hb_089889_020 0.2281777129 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
16 Hb_103790_010 0.2361077236 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
17 Hb_004570_050 0.2365738784 - - kinase, putative [Ricinus communis]
18 Hb_011932_010 0.2394306245 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
19 Hb_170487_010 0.2405464547 - - -
20 Hb_002141_020 0.2411253947 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_160203_010 Hb_160203_010 Hb_000996_180 Hb_000996_180 Hb_160203_010--Hb_000996_180 Hb_000152_670 Hb_000152_670 Hb_160203_010--Hb_000152_670 Hb_015354_010 Hb_015354_010 Hb_160203_010--Hb_015354_010 Hb_170532_010 Hb_170532_010 Hb_160203_010--Hb_170532_010 Hb_002783_010 Hb_002783_010 Hb_160203_010--Hb_002783_010 Hb_124961_010 Hb_124961_010 Hb_160203_010--Hb_124961_010 Hb_107847_010 Hb_107847_010 Hb_000996_180--Hb_107847_010 Hb_089889_020 Hb_089889_020 Hb_000996_180--Hb_089889_020 Hb_009693_030 Hb_009693_030 Hb_000996_180--Hb_009693_030 Hb_000996_180--Hb_000152_670 Hb_009838_130 Hb_009838_130 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180 Hb_001052_040 Hb_001052_040 Hb_000152_670--Hb_001052_040 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_000152_670--Hb_015354_010 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_015354_010--Hb_001052_040 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_173178_020 Hb_173178_020 Hb_015354_010--Hb_173178_020 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_002742_080 Hb_002742_080 Hb_015354_010--Hb_002742_080 Hb_170532_010--Hb_124961_010 Hb_171619_010 Hb_171619_010 Hb_170532_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_170532_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_170532_010--Hb_000160_150 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_118720_010 Hb_118720_010 Hb_002783_010--Hb_118720_010 Hb_002783_010--Hb_002742_080 Hb_002783_010--Hb_015354_010 Hb_002783_010--Hb_000152_670 Hb_002783_010--Hb_001052_040 Hb_001865_040 Hb_001865_040 Hb_002783_010--Hb_001865_040 Hb_124961_010--Hb_171619_010 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.71228 4.23734 3.04832 2.63664 2.43578 8.88235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18077 0.838832 0 0.392405 0

CAGE analysis