Hb_007136_020

Information

Type -
Description -
Location Contig7136: 17052-21250
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00650g
description POPTRDRAFT_771064; hypothetical protein
nr
ID XP_011000672.1
description PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
swissprot
ID Q9LR75
description Coproporphyrinogen-III oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=CPX1 PE=2 SV=1
trembl
ID B9HZJ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s00650g PE=4 SV=2
Gene Ontology
ID GO:0004109
description coproporphyrinogen iii oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55391: 17170-28035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007136_020 0.0 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
2 Hb_124961_010 0.1623509064 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
3 Hb_003297_020 0.1747687786 - - unknown [Populus trichocarpa x Populus deltoides]
4 Hb_101020_010 0.1784205997 - - -
5 Hb_170532_010 0.1887353799 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_006816_340 0.1991100719 - - -
7 Hb_070385_010 0.2089295969 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
8 Hb_001300_050 0.2100845524 - - -
9 Hb_171619_010 0.2138282903 - - protein binding protein, putative [Ricinus communis]
10 Hb_068804_080 0.2176023642 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
11 Hb_160203_010 0.2189905318 - - -
12 Hb_004570_050 0.2207954503 - - kinase, putative [Ricinus communis]
13 Hb_002411_130 0.2293208921 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
14 Hb_156526_010 0.2375640848 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
15 Hb_103790_010 0.2393631932 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
16 Hb_000302_160 0.2424129151 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
17 Hb_000429_250 0.2425113732 - - hypothetical protein L484_000744 [Morus notabilis]
18 Hb_130134_030 0.2447498565 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
19 Hb_007508_040 0.2460610621 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
20 Hb_001005_150 0.246481465 - - -

Gene co-expression network

sample Hb_007136_020 Hb_007136_020 Hb_124961_010 Hb_124961_010 Hb_007136_020--Hb_124961_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_007136_020--Hb_101020_010 Hb_170532_010 Hb_170532_010 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_124961_010--Hb_170532_010 Hb_171619_010 Hb_171619_010 Hb_124961_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_124961_010--Hb_000160_150 Hb_124961_010--Hb_101020_010 Hb_003297_020--Hb_070385_010 Hb_003297_020--Hb_101020_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_101020_010--Hb_000160_150 Hb_170532_010--Hb_171619_010 Hb_170532_010--Hb_004570_050 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_006816_340--Hb_004570_050 Hb_006816_340--Hb_124961_010 Hb_006816_340--Hb_170532_010 Hb_003895_030 Hb_003895_030 Hb_006816_340--Hb_003895_030 Hb_006816_340--Hb_171619_010 Hb_070385_010--Hb_002249_110 Hb_130134_030 Hb_130134_030 Hb_070385_010--Hb_130134_030 Hb_134956_010 Hb_134956_010 Hb_070385_010--Hb_134956_010 Hb_088428_010 Hb_088428_010 Hb_070385_010--Hb_088428_010 Hb_130134_020 Hb_130134_020 Hb_070385_010--Hb_130134_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638167 0.43679 0.601714 0.458399 0.564969 1.70658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0890484 0.34998 0 0 0

CAGE analysis