Hb_070385_010

Information

Type -
Description -
Location Contig70385: 3517-3753
Sequence    

Annotation

kegg
ID pmum:103323653
description uncharacterized LOC103323653
nr
ID XP_008223881.1
description PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XTW0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014047mg PE=4 SV=1
Gene Ontology
ID GO:0044237
description fiber protein fb15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070385_010 0.0 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
2 Hb_003297_020 0.1659776811 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_002249_110 0.1759282499 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
4 Hb_130134_030 0.1857273426 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
5 Hb_134956_010 0.1881599498 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
6 Hb_088428_010 0.1913817624 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
7 Hb_130134_020 0.2042020258 - - -
8 Hb_101020_010 0.2052044454 - - -
9 Hb_007136_020 0.2089295969 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
10 Hb_089971_010 0.209129132 - - PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]
11 Hb_077211_010 0.2099514782 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
12 Hb_005883_040 0.2184819102 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
13 Hb_001385_090 0.2212681977 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_000295_090 0.2291623103 - - Clathrin light chain 2 [Glycine soja]
15 Hb_074979_030 0.234435318 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
16 Hb_121467_010 0.2350077491 - - tubulin-specific chaperone E, putative [Ricinus communis]
17 Hb_001767_120 0.2411466266 - - -
18 Hb_142751_010 0.2447266339 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011139_060 0.2481766617 - - -
20 Hb_004662_010 0.2493053988 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]

Gene co-expression network

sample Hb_070385_010 Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_070385_010--Hb_003297_020 Hb_002249_110 Hb_002249_110 Hb_070385_010--Hb_002249_110 Hb_130134_030 Hb_130134_030 Hb_070385_010--Hb_130134_030 Hb_134956_010 Hb_134956_010 Hb_070385_010--Hb_134956_010 Hb_088428_010 Hb_088428_010 Hb_070385_010--Hb_088428_010 Hb_130134_020 Hb_130134_020 Hb_070385_010--Hb_130134_020 Hb_007136_020 Hb_007136_020 Hb_003297_020--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_003297_020--Hb_101020_010 Hb_003297_020--Hb_002249_110 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_000295_090 Hb_000295_090 Hb_002249_110--Hb_000295_090 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_115578_010 Hb_115578_010 Hb_002249_110--Hb_115578_010 Hb_001385_090 Hb_001385_090 Hb_002249_110--Hb_001385_090 Hb_130134_030--Hb_130134_020 Hb_178041_010 Hb_178041_010 Hb_130134_030--Hb_178041_010 Hb_130134_030--Hb_088428_010 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_134956_010--Hb_003297_020 Hb_134956_010--Hb_002249_110 Hb_134956_010--Hb_088428_010 Hb_089971_010 Hb_089971_010 Hb_134956_010--Hb_089971_010 Hb_134956_010--Hb_077211_010 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_088428_010--Hb_178041_010 Hb_009119_030 Hb_009119_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060 Hb_134310_020 Hb_134310_020 Hb_130134_020--Hb_134310_020 Hb_130134_020--Hb_000295_090 Hb_130134_020--Hb_178041_010 Hb_130134_020--Hb_003376_070 Hb_130134_020--Hb_088428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3279 3.73497 11.3928 16.0879 18.8665 68.6598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09626 3.43195 0 2.31136 0

CAGE analysis