Hb_002249_110

Information

Type -
Description -
Location Contig2249: 98298-102030
Sequence    

Annotation

kegg
ID rcu:RCOM_1503550
description hypothetical protein
nr
ID XP_012090588.1
description PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
swissprot
ID Q6NRI8
description Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1
trembl
ID B9RA67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503550 PE=4 SV=1
Gene Ontology
ID GO:0046982
description centromere protein s isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23401: 98350-100515 , PASA_asmbl_23403: 98338-100073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_110 0.0 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
2 Hb_000295_090 0.143982607 - - Clathrin light chain 2 [Glycine soja]
3 Hb_071923_010 0.1644235314 - - -
4 Hb_070385_010 0.1759282499 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
5 Hb_003297_020 0.1796516093 - - unknown [Populus trichocarpa x Populus deltoides]
6 Hb_115578_010 0.1874886245 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
7 Hb_001385_090 0.1900391284 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
8 Hb_088774_010 0.2047155981 - - -
9 Hb_000523_100 0.2191313377 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
10 Hb_001722_020 0.2219350984 - - -
11 Hb_000707_070 0.2247649185 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
12 Hb_176117_010 0.2270592351 - - Cold-inducible RNA-binding protein [Morus notabilis]
13 Hb_130134_020 0.2315937846 - - -
14 Hb_134956_010 0.232319529 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
15 Hb_011794_020 0.234061678 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_130134_030 0.2351869372 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
17 Hb_000270_500 0.2354922562 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
18 Hb_181320_010 0.2390325861 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
19 Hb_000059_090 0.2399441274 - - -
20 Hb_001675_060 0.2427537634 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002249_110 Hb_002249_110 Hb_000295_090 Hb_000295_090 Hb_002249_110--Hb_000295_090 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_002249_110--Hb_003297_020 Hb_115578_010 Hb_115578_010 Hb_002249_110--Hb_115578_010 Hb_001385_090 Hb_001385_090 Hb_002249_110--Hb_001385_090 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_001722_020 Hb_001722_020 Hb_071923_010--Hb_001722_020 Hb_071923_010--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_071923_010--Hb_000295_090 Hb_071923_010--Hb_003297_020 Hb_070385_010--Hb_003297_020 Hb_130134_030 Hb_130134_030 Hb_070385_010--Hb_130134_030 Hb_134956_010 Hb_134956_010 Hb_070385_010--Hb_134956_010 Hb_088428_010 Hb_088428_010 Hb_070385_010--Hb_088428_010 Hb_070385_010--Hb_130134_020 Hb_007136_020 Hb_007136_020 Hb_003297_020--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_003297_020--Hb_101020_010 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_115578_010--Hb_001385_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72689 0.933732 1.26927 1.07511 4.20083 17.9426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27004 0.749324 0 0.114179 0

CAGE analysis