Hb_000059_090

Information

Type -
Description -
Location Contig59: 87212-88440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50160: 87361-88211
cDNA
(Sanger)
(ID:Location)		 011_O17.ab1: 87440-88199 , 016_J13.ab1: 87440-88211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_090 0.0 - - -
2 Hb_000295_090 0.1883073948 - - Clathrin light chain 2 [Glycine soja]
3 Hb_056531_040 0.1938239032 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
4 Hb_000707_070 0.2045590336 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
5 Hb_001235_060 0.2060795453 - - -
6 Hb_115578_010 0.2086051768 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
7 Hb_086287_020 0.2146080568 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
8 Hb_088774_010 0.215836306 - - -
9 Hb_000115_270 0.2172805691 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
10 Hb_103351_010 0.219025708 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
11 Hb_001385_090 0.2245856648 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
12 Hb_059952_010 0.2293537835 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
13 Hb_005933_010 0.2300810773 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
14 Hb_124587_010 0.2331947931 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
15 Hb_000248_010 0.2353005203 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
16 Hb_124567_010 0.2385755973 - - -
17 Hb_088065_010 0.2386425875 - - hypothetical protein glysoja_007934 [Glycine soja]
18 Hb_002249_110 0.2399441274 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
19 Hb_000962_010 0.2405298598 - - -
20 Hb_000523_100 0.2419330261 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]

Gene co-expression network

sample Hb_000059_090 Hb_000059_090 Hb_000295_090 Hb_000295_090 Hb_000059_090--Hb_000295_090 Hb_056531_040 Hb_056531_040 Hb_000059_090--Hb_056531_040 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_115578_010 Hb_115578_010 Hb_000059_090--Hb_115578_010 Hb_086287_020 Hb_086287_020 Hb_000059_090--Hb_086287_020 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_056531_040--Hb_086287_020 Hb_000002_030 Hb_000002_030 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_000117_020 Hb_000117_020 Hb_000707_070--Hb_000117_020 Hb_103351_010 Hb_103351_010 Hb_000707_070--Hb_103351_010 Hb_124587_010 Hb_124587_010 Hb_000707_070--Hb_124587_010 Hb_126838_020 Hb_126838_020 Hb_000707_070--Hb_126838_020 Hb_000707_070--Hb_000295_090 Hb_005933_010 Hb_005933_010 Hb_001235_060--Hb_005933_010 Hb_000248_030 Hb_000248_030 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_122567_020 Hb_122567_020 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_001235_060--Hb_000002_030 Hb_115578_010--Hb_001385_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_115578_010--Hb_002249_110 Hb_115578_010--Hb_130134_020 Hb_098842_010 Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
193.358 65.7301 2.17518 22.8496 132.871 1719.22
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.793 45.142 43.6097 9.16969 0

CAGE analysis