Hb_126838_020

Information

Type -
Description -
Location Contig126838: 6361-10365
Sequence    

Annotation

kegg
ID rcu:RCOM_1574750
description Casbene synthase, chloroplast precursor, putative (EC:4.2.3.8)
nr
ID BAJ53216.1
description JHL22C18.7 [Jatropha curcas]
swissprot
ID B9RI00
description Probable terpene synthase 6 OS=Ricinus communis GN=TPS6 PE=3 SV=1
trembl
ID E6NUA6
description JHL22C18.7 protein OS=Jatropha curcas GN=JHL22C18.7 PE=4 SV=1
Gene Ontology
ID GO:0010334
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126838_020 0.0 - - JHL22C18.7 [Jatropha curcas]
2 Hb_000707_070 0.1911802432 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
3 Hb_003859_010 0.2284095631 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
4 Hb_011525_020 0.2316628266 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
5 Hb_003360_020 0.2364219183 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
6 Hb_002796_030 0.2401546701 - - -
7 Hb_000213_060 0.2489321853 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
8 Hb_000466_060 0.2490112533 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_000580_060 0.2512751076 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
10 Hb_002249_110 0.2516514213 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
11 Hb_000295_090 0.2521916943 - - Clathrin light chain 2 [Glycine soja]
12 Hb_080530_020 0.2550990713 - - -
13 Hb_005016_150 0.2618438688 - - -
14 Hb_103351_010 0.2624404847 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
15 Hb_003012_080 0.2625518419 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001252_170 0.26292271 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
17 Hb_000270_500 0.2632493916 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
18 Hb_000059_090 0.2641271067 - - -
19 Hb_001675_060 0.266301369 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
20 Hb_010290_020 0.2667029603 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_126838_020 Hb_126838_020 Hb_000707_070 Hb_000707_070 Hb_126838_020--Hb_000707_070 Hb_003859_010 Hb_003859_010 Hb_126838_020--Hb_003859_010 Hb_011525_020 Hb_011525_020 Hb_126838_020--Hb_011525_020 Hb_003360_020 Hb_003360_020 Hb_126838_020--Hb_003360_020 Hb_002796_030 Hb_002796_030 Hb_126838_020--Hb_002796_030 Hb_000213_060 Hb_000213_060 Hb_126838_020--Hb_000213_060 Hb_000117_020 Hb_000117_020 Hb_000707_070--Hb_000117_020 Hb_103351_010 Hb_103351_010 Hb_000707_070--Hb_103351_010 Hb_124587_010 Hb_124587_010 Hb_000707_070--Hb_124587_010 Hb_000295_090 Hb_000295_090 Hb_000707_070--Hb_000295_090 Hb_000059_090 Hb_000059_090 Hb_000707_070--Hb_000059_090 Hb_001523_010 Hb_001523_010 Hb_003859_010--Hb_001523_010 Hb_000466_060 Hb_000466_060 Hb_003859_010--Hb_000466_060 Hb_005217_020 Hb_005217_020 Hb_003859_010--Hb_005217_020 Hb_003859_010--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_003859_010--Hb_002837_070 Hb_000441_230 Hb_000441_230 Hb_003859_010--Hb_000441_230 Hb_003376_170 Hb_003376_170 Hb_011525_020--Hb_003376_170 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_011525_020--Hb_000441_230 Hb_011525_020--Hb_003360_020 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_000580_060 Hb_000580_060 Hb_003360_020--Hb_000580_060 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020 Hb_002796_030--Hb_011525_020 Hb_002135_040 Hb_002135_040 Hb_002796_030--Hb_002135_040 Hb_002796_030--Hb_003360_020 Hb_003012_080 Hb_003012_080 Hb_002796_030--Hb_003012_080 Hb_002796_030--Hb_003376_170 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_113216_010 Hb_113216_010 Hb_000213_060--Hb_113216_010 Hb_000016_180 Hb_000016_180 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5702 3.17912 0 0.0705067 6.47919 35.0198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14157 1.28278 0.166656 0.0978658 1.48588

CAGE analysis