Hb_003012_080

Information

Type -
Description -
Location Contig3012: 58508-59339
Sequence    

Annotation

kegg
ID rcu:RCOM_0654680
description ankyrin repeat-containing protein, putative
nr
ID XP_002521359.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5U0
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0654680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003012_080 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_003360_020 0.2077874531 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
3 Hb_002253_110 0.2404737087 - - cysteine desulfurylase, putative [Ricinus communis]
4 Hb_011525_020 0.242148378 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
5 Hb_000563_280 0.2482134642 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
6 Hb_000580_060 0.2501329712 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
7 Hb_002796_030 0.2504180738 - - -
8 Hb_182310_010 0.2512127791 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_067345_050 0.2527096863 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
10 Hb_001668_030 0.259482533 - - conserved hypothetical protein [Ricinus communis]
11 Hb_066784_020 0.262050704 - - conserved hypothetical protein [Ricinus communis]
12 Hb_126838_020 0.2625518419 - - JHL22C18.7 [Jatropha curcas]
13 Hb_004480_070 0.269143673 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001675_060 0.2758521864 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
15 Hb_000454_030 0.2777104297 - - -
16 Hb_001017_100 0.2785646065 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
17 Hb_103351_010 0.2808417537 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
18 Hb_000612_070 0.2835827149 - - conserved hypothetical protein [Ricinus communis]
19 Hb_171554_020 0.2841931101 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
20 Hb_005271_030 0.2855219507 - - copper-transporting atpase p-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_003012_080 Hb_003012_080 Hb_003360_020 Hb_003360_020 Hb_003012_080--Hb_003360_020 Hb_002253_110 Hb_002253_110 Hb_003012_080--Hb_002253_110 Hb_011525_020 Hb_011525_020 Hb_003012_080--Hb_011525_020 Hb_000563_280 Hb_000563_280 Hb_003012_080--Hb_000563_280 Hb_000580_060 Hb_000580_060 Hb_003012_080--Hb_000580_060 Hb_002796_030 Hb_002796_030 Hb_003012_080--Hb_002796_030 Hb_003360_020--Hb_002253_110 Hb_000441_230 Hb_000441_230 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_003360_020--Hb_000580_060 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020 Hb_003376_170 Hb_003376_170 Hb_011525_020--Hb_003376_170 Hb_005217_020 Hb_005217_020 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_011525_020--Hb_000441_230 Hb_011525_020--Hb_003360_020 Hb_182310_010 Hb_182310_010 Hb_000563_280--Hb_182310_010 Hb_105484_010 Hb_105484_010 Hb_000563_280--Hb_105484_010 Hb_067345_050 Hb_067345_050 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000831_040 Hb_000831_040 Hb_000563_280--Hb_000831_040 Hb_010997_050 Hb_010997_050 Hb_000563_280--Hb_010997_050 Hb_000580_060--Hb_010290_020 Hb_000580_060--Hb_000441_230 Hb_004307_040 Hb_004307_040 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_005568_070 Hb_005568_070 Hb_000580_060--Hb_005568_070 Hb_002796_030--Hb_011525_020 Hb_002135_040 Hb_002135_040 Hb_002796_030--Hb_002135_040 Hb_126838_020 Hb_126838_020 Hb_002796_030--Hb_126838_020 Hb_002796_030--Hb_003360_020 Hb_002796_030--Hb_003376_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285454 0 0 0 0.378956 0.837706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.180466 0 0 0 0

CAGE analysis