Hb_000831_040

Information

Type -
Description -
Location Contig831: 124632-125284
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000831_040 0.0 - - -
2 Hb_105484_010 0.1615014215 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
3 Hb_011360_100 0.1822338766 - - -
4 Hb_004458_050 0.1823620707 - - -
5 Hb_005741_010 0.1826409232 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
6 Hb_059069_010 0.1834370064 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
7 Hb_038675_010 0.1835700397 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
8 Hb_012194_010 0.1839534664 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
9 Hb_006275_030 0.1882311812 - - -
10 Hb_000574_020 0.1890119203 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002463_080 0.1911867482 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000195_050 0.1921102167 - - -
13 Hb_003556_020 0.1921770481 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
14 Hb_000563_280 0.196375621 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
15 Hb_000563_290 0.2052631566 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
16 Hb_182310_010 0.2077814489 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_010222_010 0.2117190439 - - -
18 Hb_000188_090 0.213375334 - - JHL22C18.10 [Jatropha curcas]
19 Hb_000934_220 0.2163533897 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
20 Hb_001241_040 0.2188847455 - - -

Gene co-expression network

sample Hb_000831_040 Hb_000831_040 Hb_105484_010 Hb_105484_010 Hb_000831_040--Hb_105484_010 Hb_011360_100 Hb_011360_100 Hb_000831_040--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000831_040--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000831_040--Hb_005741_010 Hb_059069_010 Hb_059069_010 Hb_000831_040--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_000831_040--Hb_038675_010 Hb_098842_010 Hb_098842_010 Hb_105484_010--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_105484_010--Hb_010997_050 Hb_000563_280 Hb_000563_280 Hb_105484_010--Hb_000563_280 Hb_182310_010 Hb_182310_010 Hb_105484_010--Hb_182310_010 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_059069_010 Hb_011360_100--Hb_038675_010 Hb_011360_100--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_004458_050--Hb_005741_010 Hb_004458_050--Hb_012194_010 Hb_004458_050--Hb_059069_010 Hb_004458_050--Hb_038675_010 Hb_004458_050--Hb_006275_030 Hb_005741_010--Hb_012194_010 Hb_005741_010--Hb_006275_030 Hb_005741_010--Hb_059069_010 Hb_005741_010--Hb_038675_010 Hb_059069_010--Hb_038675_010 Hb_000195_050 Hb_000195_050 Hb_059069_010--Hb_000195_050 Hb_059069_010--Hb_012194_010 Hb_038675_010--Hb_000195_050 Hb_038675_010--Hb_012194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4705 0 0 0 7.42164 85.5599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.65735 0 0

CAGE analysis