Hb_165078_010

Information

Type -
Description -
Location Contig165078: 207-562
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165078_010 0.0 - - -
2 Hb_057746_010 0.2093928835 - - -
3 Hb_105484_010 0.215062797 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
4 Hb_050286_020 0.2374515307 - - -
5 Hb_000831_040 0.2380074061 - - -
6 Hb_098842_010 0.2554773521 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
7 Hb_004317_050 0.2560608547 - - -
8 Hb_000563_280 0.262350483 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
9 Hb_007904_190 0.2640857931 - - -
10 Hb_010997_050 0.2711511711 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
11 Hb_000563_290 0.2725641524 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
12 Hb_002249_110 0.273607035 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
13 Hb_000195_050 0.2744506188 - - -
14 Hb_002490_040 0.2773987585 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
15 Hb_004429_040 0.2800709825 - - -
16 Hb_182310_010 0.2812594926 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_038675_010 0.2812865409 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
18 Hb_059069_010 0.2815535391 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
19 Hb_123915_050 0.285719315 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
20 Hb_011360_100 0.2859782268 - - -

Gene co-expression network

sample Hb_165078_010 Hb_165078_010 Hb_057746_010 Hb_057746_010 Hb_165078_010--Hb_057746_010 Hb_105484_010 Hb_105484_010 Hb_165078_010--Hb_105484_010 Hb_050286_020 Hb_050286_020 Hb_165078_010--Hb_050286_020 Hb_000831_040 Hb_000831_040 Hb_165078_010--Hb_000831_040 Hb_098842_010 Hb_098842_010 Hb_165078_010--Hb_098842_010 Hb_004317_050 Hb_004317_050 Hb_165078_010--Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_105484_010--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_105484_010--Hb_010997_050 Hb_000563_280 Hb_000563_280 Hb_105484_010--Hb_000563_280 Hb_105484_010--Hb_000831_040 Hb_182310_010 Hb_182310_010 Hb_105484_010--Hb_182310_010 Hb_015930_010 Hb_015930_010 Hb_050286_020--Hb_015930_010 Hb_007827_020 Hb_007827_020 Hb_050286_020--Hb_007827_020 Hb_009486_010 Hb_009486_010 Hb_050286_020--Hb_009486_010 Hb_000270_500 Hb_000270_500 Hb_050286_020--Hb_000270_500 Hb_001846_050 Hb_001846_050 Hb_050286_020--Hb_001846_050 Hb_011360_100 Hb_011360_100 Hb_000831_040--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000831_040--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000831_040--Hb_005741_010 Hb_059069_010 Hb_059069_010 Hb_000831_040--Hb_059069_010 Hb_000831_040--Hb_038675_010 Hb_098842_010--Hb_010997_050 Hb_000004_140 Hb_000004_140 Hb_098842_010--Hb_000004_140 Hb_004282_030 Hb_004282_030 Hb_098842_010--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_098842_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_098842_010--Hb_064951_010 Hb_004317_050--Hb_002490_040 Hb_004429_040 Hb_004429_040 Hb_004317_050--Hb_004429_040 Hb_004317_050--Hb_000563_290 Hb_004317_050--Hb_000195_050 Hb_001241_060 Hb_001241_060 Hb_004317_050--Hb_001241_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11915 0 0.415717 0 0.863384 9.62839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.811156 0 0 0

CAGE analysis