Hb_105484_010

Information

Type -
Description -
Location Contig105484: 4726-5696
Sequence    

Annotation

kegg
ID tcc:TCM_004834
description Carbohydrate-binding-like fold
nr
ID AIU49961.1
description carbohydrate-binding-like fold protein, partial [Manihot esculenta]
swissprot
ID -
description -
trembl
ID A0A097PPN1
description Carbohydrate-binding-like fold protein (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0012505
description carbohydrate-binding-like fold partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105484_010 0.0 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
2 Hb_098842_010 0.1134754148 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_010997_050 0.1268161198 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
4 Hb_000563_280 0.1330935301 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
5 Hb_000831_040 0.1615014215 - - -
6 Hb_182310_010 0.1701593803 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_165078_010 0.215062797 - - -
8 Hb_000004_140 0.2243101085 - - -
9 Hb_002490_040 0.2254299717 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
10 Hb_000563_290 0.2262808353 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
11 Hb_004429_040 0.2263002914 - - -
12 Hb_004282_030 0.2264114709 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
13 Hb_057746_010 0.2329244467 - - -
14 Hb_000195_050 0.2333441553 - - -
15 Hb_064951_010 0.2336803287 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
16 Hb_001241_060 0.2371656742 - - -
17 Hb_004317_050 0.2392386557 - - -
18 Hb_076583_010 0.246290283 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
19 Hb_038675_010 0.246615004 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
20 Hb_059069_010 0.2470704134 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]

Gene co-expression network

sample Hb_105484_010 Hb_105484_010 Hb_098842_010 Hb_098842_010 Hb_105484_010--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_105484_010--Hb_010997_050 Hb_000563_280 Hb_000563_280 Hb_105484_010--Hb_000563_280 Hb_000831_040 Hb_000831_040 Hb_105484_010--Hb_000831_040 Hb_182310_010 Hb_182310_010 Hb_105484_010--Hb_182310_010 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_098842_010--Hb_010997_050 Hb_000004_140 Hb_000004_140 Hb_098842_010--Hb_000004_140 Hb_004282_030 Hb_004282_030 Hb_098842_010--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_098842_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_098842_010--Hb_064951_010 Hb_010997_050--Hb_000004_140 Hb_010997_050--Hb_076583_010 Hb_010997_050--Hb_064951_010 Hb_010997_050--Hb_004282_030 Hb_000563_280--Hb_182310_010 Hb_067345_050 Hb_067345_050 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000563_280--Hb_000831_040 Hb_000563_280--Hb_010997_050 Hb_011360_100 Hb_011360_100 Hb_000831_040--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000831_040--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000831_040--Hb_005741_010 Hb_059069_010 Hb_059069_010 Hb_000831_040--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_000831_040--Hb_038675_010 Hb_182310_010--Hb_067345_050 Hb_075570_010 Hb_075570_010 Hb_182310_010--Hb_075570_010 Hb_001241_040 Hb_001241_040 Hb_182310_010--Hb_001241_040 Hb_001604_110 Hb_001604_110 Hb_182310_010--Hb_001604_110 Hb_057746_010 Hb_057746_010 Hb_165078_010--Hb_057746_010 Hb_050286_020 Hb_050286_020 Hb_165078_010--Hb_050286_020 Hb_165078_010--Hb_000831_040 Hb_165078_010--Hb_098842_010 Hb_004317_050 Hb_004317_050 Hb_165078_010--Hb_004317_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.481076 0 0 0 0.243979 1.79579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis