Hb_001241_040

Information

Type -
Description -
Location Contig1241: 77007-77223
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07331: 77306-91884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_040 0.0 - - -
2 Hb_010290_020 0.180204345 - - RAB6-interacting protein, putative [Ricinus communis]
3 Hb_182310_010 0.1884771741 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_000563_280 0.2031505845 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
5 Hb_001604_110 0.2115227077 - - -
6 Hb_000831_040 0.2188847455 - - -
7 Hb_001892_160 0.2192260263 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
8 Hb_171554_020 0.2216216401 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
9 Hb_004307_040 0.222030297 - - -
10 Hb_177627_010 0.2223226593 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_007218_090 0.2281064994 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
12 Hb_075570_010 0.2380784065 - - -
13 Hb_000007_310 0.238446781 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
14 Hb_000012_300 0.2405969738 - - -
15 Hb_000580_060 0.2428599303 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
16 Hb_001767_020 0.2436054522 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
17 Hb_005539_320 0.2449163938 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
18 Hb_001775_040 0.2479043113 - - -
19 Hb_132629_010 0.2486691686 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
20 Hb_003360_020 0.2560968514 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]

Gene co-expression network

sample Hb_001241_040 Hb_001241_040 Hb_010290_020 Hb_010290_020 Hb_001241_040--Hb_010290_020 Hb_182310_010 Hb_182310_010 Hb_001241_040--Hb_182310_010 Hb_000563_280 Hb_000563_280 Hb_001241_040--Hb_000563_280 Hb_001604_110 Hb_001604_110 Hb_001241_040--Hb_001604_110 Hb_000831_040 Hb_000831_040 Hb_001241_040--Hb_000831_040 Hb_001892_160 Hb_001892_160 Hb_001241_040--Hb_001892_160 Hb_000580_060 Hb_000580_060 Hb_010290_020--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_010290_020--Hb_004307_040 Hb_003540_140 Hb_003540_140 Hb_010290_020--Hb_003540_140 Hb_005568_070 Hb_005568_070 Hb_010290_020--Hb_005568_070 Hb_003360_020 Hb_003360_020 Hb_010290_020--Hb_003360_020 Hb_000329_540 Hb_000329_540 Hb_010290_020--Hb_000329_540 Hb_182310_010--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_182310_010--Hb_067345_050 Hb_105484_010 Hb_105484_010 Hb_182310_010--Hb_105484_010 Hb_075570_010 Hb_075570_010 Hb_182310_010--Hb_075570_010 Hb_182310_010--Hb_001604_110 Hb_000563_280--Hb_105484_010 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000563_280--Hb_000831_040 Hb_010997_050 Hb_010997_050 Hb_000563_280--Hb_010997_050 Hb_005539_320 Hb_005539_320 Hb_001604_110--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_001604_110--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_001604_110--Hb_000153_020 Hb_132629_010 Hb_132629_010 Hb_001604_110--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_001604_110--Hb_000007_310 Hb_001604_110--Hb_075570_010 Hb_000831_040--Hb_105484_010 Hb_011360_100 Hb_011360_100 Hb_000831_040--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000831_040--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000831_040--Hb_005741_010 Hb_059069_010 Hb_059069_010 Hb_000831_040--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_000831_040--Hb_038675_010 Hb_156144_020 Hb_156144_020 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_001892_160--Hb_000007_310 Hb_001892_160--Hb_132629_010 Hb_001892_160--Hb_000153_020 Hb_001892_160--Hb_177627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7171 0 0 0 23.8865 62.1515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 6.24111 2.15374 0

CAGE analysis