Hb_004458_050

Information

Type -
Description -
Location Contig4458: 109675-117425
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004458_050 0.0 - - -
2 Hb_005741_010 0.0047459508 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
3 Hb_011360_100 0.0139900847 - - -
4 Hb_012194_010 0.017342834 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_059069_010 0.0306946525 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
6 Hb_038675_010 0.0318149575 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
7 Hb_006275_030 0.0395247014 - - -
8 Hb_000574_020 0.0425882827 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002463_080 0.0503464966 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_003556_020 0.0535860893 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
11 Hb_000195_050 0.0707586764 - - -
12 Hb_010222_010 0.1010959094 - - -
13 Hb_000188_090 0.1043691626 - - JHL22C18.10 [Jatropha curcas]
14 Hb_000563_290 0.1048609459 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
15 Hb_000934_220 0.1100881985 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
16 Hb_001887_030 0.1299391848 - - -
17 Hb_044767_010 0.1329581737 - - -
18 Hb_066620_010 0.135816938 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
19 Hb_012587_010 0.1434558926 - - -
20 Hb_003985_020 0.1473767283 - - -

Gene co-expression network

sample Hb_004458_050 Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_004458_050--Hb_005741_010 Hb_011360_100 Hb_011360_100 Hb_004458_050--Hb_011360_100 Hb_012194_010 Hb_012194_010 Hb_004458_050--Hb_012194_010 Hb_059069_010 Hb_059069_010 Hb_004458_050--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_004458_050--Hb_038675_010 Hb_006275_030 Hb_006275_030 Hb_004458_050--Hb_006275_030 Hb_005741_010--Hb_012194_010 Hb_005741_010--Hb_011360_100 Hb_005741_010--Hb_006275_030 Hb_005741_010--Hb_059069_010 Hb_005741_010--Hb_038675_010 Hb_011360_100--Hb_059069_010 Hb_011360_100--Hb_038675_010 Hb_011360_100--Hb_012194_010 Hb_011360_100--Hb_006275_030 Hb_012194_010--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_012194_010--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_012194_010--Hb_002463_080 Hb_059069_010--Hb_038675_010 Hb_000195_050 Hb_000195_050 Hb_059069_010--Hb_000195_050 Hb_059069_010--Hb_012194_010 Hb_038675_010--Hb_000195_050 Hb_038675_010--Hb_012194_010 Hb_006275_030--Hb_000574_020 Hb_006275_030--Hb_002463_080 Hb_003556_020 Hb_003556_020 Hb_006275_030--Hb_003556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642804 0 0 0 0 0.115861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis