Hb_012194_010

Information

Type -
Description -
Location Contig12194: 2621-10726
Sequence    

Annotation

kegg
ID cit:102612829
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006469117.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061G9I5
description Non-LTR retroelement reverse transcriptase OS=Theobroma cacao GN=TCM_027189 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012194_010 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_005741_010 0.0125972989 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
3 Hb_004458_050 0.017342834 - - -
4 Hb_006275_030 0.0221878018 - - -
5 Hb_000574_020 0.0252527098 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_011360_100 0.0313298226 - - -
7 Hb_002463_080 0.0330148217 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003556_020 0.0362562684 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
9 Hb_059069_010 0.0480269196 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
10 Hb_038675_010 0.0491465724 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
11 Hb_010222_010 0.0838080785 - - -
12 Hb_000188_090 0.0870852173 - - JHL22C18.10 [Jatropha curcas]
13 Hb_000195_050 0.0880551427 - - -
14 Hb_000934_220 0.0928113419 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
15 Hb_001887_030 0.1126898616 - - -
16 Hb_044767_010 0.1157134328 - - -
17 Hb_066620_010 0.1185766318 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
18 Hb_000563_290 0.1221051531 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
19 Hb_012587_010 0.1262278907 - - -
20 Hb_003985_020 0.130155298 - - -

Gene co-expression network

sample Hb_012194_010 Hb_012194_010 Hb_005741_010 Hb_005741_010 Hb_012194_010--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_012194_010--Hb_004458_050 Hb_006275_030 Hb_006275_030 Hb_012194_010--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_012194_010--Hb_000574_020 Hb_011360_100 Hb_011360_100 Hb_012194_010--Hb_011360_100 Hb_002463_080 Hb_002463_080 Hb_012194_010--Hb_002463_080 Hb_005741_010--Hb_004458_050 Hb_005741_010--Hb_011360_100 Hb_005741_010--Hb_006275_030 Hb_059069_010 Hb_059069_010 Hb_005741_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_005741_010--Hb_038675_010 Hb_004458_050--Hb_011360_100 Hb_004458_050--Hb_059069_010 Hb_004458_050--Hb_038675_010 Hb_004458_050--Hb_006275_030 Hb_006275_030--Hb_000574_020 Hb_006275_030--Hb_002463_080 Hb_003556_020 Hb_003556_020 Hb_006275_030--Hb_003556_020 Hb_000574_020--Hb_002463_080 Hb_000574_020--Hb_003556_020 Hb_000574_020--Hb_005741_010 Hb_000574_020--Hb_004458_050 Hb_011360_100--Hb_059069_010 Hb_011360_100--Hb_038675_010 Hb_011360_100--Hb_006275_030 Hb_002463_080--Hb_003556_020 Hb_002463_080--Hb_005741_010 Hb_002463_080--Hb_004458_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0202645 0 0 0 0 0.0335571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis