Hb_002463_080

Information

Type -
Description -
Location Contig2463: 138376-143172
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002463_080 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003556_020 0.0032428972 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
3 Hb_000574_020 0.0077645471 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_006275_030 0.01083001 - - -
5 Hb_012194_010 0.0330148217 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_005741_010 0.0456048032 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
7 Hb_004458_050 0.0503464966 - - -
8 Hb_010222_010 0.0508444863 - - -
9 Hb_000188_090 0.0541269755 - - JHL22C18.10 [Jatropha curcas]
10 Hb_000934_220 0.0598630307 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
11 Hb_011360_100 0.0643186248 - - -
12 Hb_001887_030 0.0797817274 - - -
13 Hb_059069_010 0.0809908672 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
14 Hb_038675_010 0.0821085689 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
15 Hb_044767_010 0.0828121804 - - -
16 Hb_066620_010 0.0856820829 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
17 Hb_012587_010 0.0933521448 - - -
18 Hb_003985_020 0.0972897057 - - -
19 Hb_003017_010 0.0999907592 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
20 Hb_002257_070 0.1009639741 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_002463_080 Hb_002463_080 Hb_003556_020 Hb_003556_020 Hb_002463_080--Hb_003556_020 Hb_000574_020 Hb_000574_020 Hb_002463_080--Hb_000574_020 Hb_006275_030 Hb_006275_030 Hb_002463_080--Hb_006275_030 Hb_012194_010 Hb_012194_010 Hb_002463_080--Hb_012194_010 Hb_005741_010 Hb_005741_010 Hb_002463_080--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_002463_080--Hb_004458_050 Hb_003556_020--Hb_000574_020 Hb_003556_020--Hb_006275_030 Hb_003556_020--Hb_012194_010 Hb_010222_010 Hb_010222_010 Hb_003556_020--Hb_010222_010 Hb_003556_020--Hb_005741_010 Hb_000574_020--Hb_006275_030 Hb_000574_020--Hb_012194_010 Hb_000574_020--Hb_005741_010 Hb_000574_020--Hb_004458_050 Hb_006275_030--Hb_012194_010 Hb_006275_030--Hb_005741_010 Hb_006275_030--Hb_004458_050 Hb_012194_010--Hb_005741_010 Hb_012194_010--Hb_004458_050 Hb_011360_100 Hb_011360_100 Hb_012194_010--Hb_011360_100 Hb_005741_010--Hb_004458_050 Hb_005741_010--Hb_011360_100 Hb_059069_010 Hb_059069_010 Hb_005741_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_005741_010--Hb_038675_010 Hb_004458_050--Hb_011360_100 Hb_004458_050--Hb_059069_010 Hb_004458_050--Hb_038675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00575226 0 0 0 0 0.00812464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis