Hb_010222_010

Information

Type -
Description -
Location Contig10222: 20974-21795
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03300g
description POPTRDRAFT_570946; hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010222_010 0.0 - - -
2 Hb_000188_090 0.0032856735 - - JHL22C18.10 [Jatropha curcas]
3 Hb_000934_220 0.0090282064 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
4 Hb_001887_030 0.0289783758 - - -
5 Hb_044767_010 0.0320148351 - - -
6 Hb_066620_010 0.0348907216 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
7 Hb_012587_010 0.0425781888 - - -
8 Hb_003985_020 0.0465254833 - - -
9 Hb_003556_020 0.0476044016 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
10 Hb_003017_010 0.0492335271 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
11 Hb_002257_070 0.0502093232 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_056305_010 0.0505500262 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_008891_020 0.0506298782 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
14 Hb_002463_080 0.0508444863 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000574_020 0.0586007059 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_006275_030 0.0616622581 - - -
17 Hb_012194_010 0.0838080785 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_005741_010 0.0963674018 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
19 Hb_187661_010 0.0997598246 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
20 Hb_004458_050 0.1010959094 - - -

Gene co-expression network

sample Hb_010222_010 Hb_010222_010 Hb_000188_090 Hb_000188_090 Hb_010222_010--Hb_000188_090 Hb_000934_220 Hb_000934_220 Hb_010222_010--Hb_000934_220 Hb_001887_030 Hb_001887_030 Hb_010222_010--Hb_001887_030 Hb_044767_010 Hb_044767_010 Hb_010222_010--Hb_044767_010 Hb_066620_010 Hb_066620_010 Hb_010222_010--Hb_066620_010 Hb_012587_010 Hb_012587_010 Hb_010222_010--Hb_012587_010 Hb_000188_090--Hb_000934_220 Hb_000188_090--Hb_001887_030 Hb_000188_090--Hb_044767_010 Hb_000188_090--Hb_066620_010 Hb_000188_090--Hb_012587_010 Hb_000934_220--Hb_001887_030 Hb_000934_220--Hb_044767_010 Hb_000934_220--Hb_066620_010 Hb_000934_220--Hb_012587_010 Hb_001887_030--Hb_044767_010 Hb_001887_030--Hb_066620_010 Hb_001887_030--Hb_012587_010 Hb_003985_020 Hb_003985_020 Hb_001887_030--Hb_003985_020 Hb_003017_010 Hb_003017_010 Hb_001887_030--Hb_003017_010 Hb_044767_010--Hb_066620_010 Hb_044767_010--Hb_012587_010 Hb_044767_010--Hb_003985_020 Hb_044767_010--Hb_003017_010 Hb_002257_070 Hb_002257_070 Hb_044767_010--Hb_002257_070 Hb_066620_010--Hb_012587_010 Hb_066620_010--Hb_003985_020 Hb_066620_010--Hb_003017_010 Hb_066620_010--Hb_002257_070 Hb_012587_010--Hb_003985_020 Hb_012587_010--Hb_003017_010 Hb_012587_010--Hb_002257_070 Hb_056305_010 Hb_056305_010 Hb_012587_010--Hb_056305_010 Hb_008891_020 Hb_008891_020 Hb_012587_010--Hb_008891_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436402 0 0 0 0 0.48429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis