Hb_002257_070

Information

Type -
Description -
Location Contig2257: 123490-125354
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002257_070 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_056305_010 0.0003410034 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_008891_020 0.0004209264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
4 Hb_003017_010 0.0009766339 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
5 Hb_003985_020 0.0036868283 - - -
6 Hb_012587_010 0.0076367978 - - -
7 Hb_066620_010 0.0153279123 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
8 Hb_044767_010 0.0182046334 - - -
9 Hb_001887_030 0.0212416613 - - -
10 Hb_000934_220 0.0411875881 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
11 Hb_000188_090 0.0469263333 - - JHL22C18.10 [Jatropha curcas]
12 Hb_187661_010 0.049637429 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
13 Hb_010222_010 0.0502093232 - - -
14 Hb_003556_020 0.0977323495 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
15 Hb_002463_080 0.1009639741 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000574_020 0.1086984048 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_006275_030 0.1117507566 - - -
18 Hb_012194_010 0.1338197859 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_005671_030 0.1368941891 - - -
20 Hb_005741_010 0.146327431 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]

Gene co-expression network

sample Hb_002257_070 Hb_002257_070 Hb_056305_010 Hb_056305_010 Hb_002257_070--Hb_056305_010 Hb_008891_020 Hb_008891_020 Hb_002257_070--Hb_008891_020 Hb_003017_010 Hb_003017_010 Hb_002257_070--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_002257_070--Hb_003985_020 Hb_012587_010 Hb_012587_010 Hb_002257_070--Hb_012587_010 Hb_066620_010 Hb_066620_010 Hb_002257_070--Hb_066620_010 Hb_056305_010--Hb_008891_020 Hb_056305_010--Hb_003017_010 Hb_056305_010--Hb_003985_020 Hb_056305_010--Hb_012587_010 Hb_056305_010--Hb_066620_010 Hb_008891_020--Hb_003017_010 Hb_008891_020--Hb_003985_020 Hb_008891_020--Hb_012587_010 Hb_008891_020--Hb_066620_010 Hb_003017_010--Hb_003985_020 Hb_003017_010--Hb_012587_010 Hb_003017_010--Hb_066620_010 Hb_003985_020--Hb_012587_010 Hb_003985_020--Hb_066620_010 Hb_012587_010--Hb_066620_010 Hb_044767_010 Hb_044767_010 Hb_066620_010--Hb_044767_010 Hb_001887_030 Hb_001887_030 Hb_066620_010--Hb_001887_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0114587 0 0 0 0 0.0100361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis