Hb_000563_280

Information

Type -
Description -
Location Contig563: 171052-177568
Sequence    

Annotation

kegg
ID egr:104429236
description uncharacterized protein At4g02000-like
nr
ID XP_010040423.1
description PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M5VIL2
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026157mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_280 0.0 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
2 Hb_182310_010 0.040646477 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_105484_010 0.1330935301 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
4 Hb_067345_050 0.1625431753 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
5 Hb_066784_020 0.1920311175 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000831_040 0.196375621 - - -
7 Hb_010997_050 0.2018170712 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
8 Hb_001241_040 0.2031505845 - - -
9 Hb_098842_010 0.219074611 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
10 Hb_075570_010 0.2233433098 - - -
11 Hb_001604_110 0.2260147743 - - -
12 Hb_064951_010 0.2271785214 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
13 Hb_177627_010 0.2313860449 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_171554_020 0.2316023413 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
15 Hb_007218_090 0.2329976755 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
16 Hb_000007_310 0.2332840342 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
17 Hb_003529_210 0.2464428825 - - -
18 Hb_003012_080 0.2482134642 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_002837_090 0.2505546446 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
20 Hb_132629_010 0.2529634676 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000563_280 Hb_000563_280 Hb_182310_010 Hb_182310_010 Hb_000563_280--Hb_182310_010 Hb_105484_010 Hb_105484_010 Hb_000563_280--Hb_105484_010 Hb_067345_050 Hb_067345_050 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000831_040 Hb_000831_040 Hb_000563_280--Hb_000831_040 Hb_010997_050 Hb_010997_050 Hb_000563_280--Hb_010997_050 Hb_182310_010--Hb_067345_050 Hb_182310_010--Hb_105484_010 Hb_075570_010 Hb_075570_010 Hb_182310_010--Hb_075570_010 Hb_001241_040 Hb_001241_040 Hb_182310_010--Hb_001241_040 Hb_001604_110 Hb_001604_110 Hb_182310_010--Hb_001604_110 Hb_098842_010 Hb_098842_010 Hb_105484_010--Hb_098842_010 Hb_105484_010--Hb_010997_050 Hb_105484_010--Hb_000831_040 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_067345_050--Hb_066784_020 Hb_001135_270 Hb_001135_270 Hb_067345_050--Hb_001135_270 Hb_003529_210 Hb_003529_210 Hb_067345_050--Hb_003529_210 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030 Hb_066784_020--Hb_003529_210 Hb_064951_010 Hb_064951_010 Hb_066784_020--Hb_064951_010 Hb_076583_010 Hb_076583_010 Hb_066784_020--Hb_076583_010 Hb_001899_010 Hb_001899_010 Hb_066784_020--Hb_001899_010 Hb_066784_020--Hb_001135_270 Hb_011360_100 Hb_011360_100 Hb_000831_040--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000831_040--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000831_040--Hb_005741_010 Hb_059069_010 Hb_059069_010 Hb_000831_040--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_000831_040--Hb_038675_010 Hb_010997_050--Hb_098842_010 Hb_000004_140 Hb_000004_140 Hb_010997_050--Hb_000004_140 Hb_010997_050--Hb_076583_010 Hb_010997_050--Hb_064951_010 Hb_004282_030 Hb_004282_030 Hb_010997_050--Hb_004282_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100733 0 0 0 0.0768451 0.238471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis