Hb_182310_010

Information

Type -
Description -
Location Contig182310: 155-766
Sequence    

Annotation

kegg
ID cmo:103490604
description uncharacterized LOC103490604
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MYZ3
description Protein MCM10 OS=Gossypium arboreum GN=F383_31527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182310_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_000563_280 0.040646477 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_067345_050 0.1542342912 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
4 Hb_105484_010 0.1701593803 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
5 Hb_075570_010 0.1851497626 - - -
6 Hb_001241_040 0.1884771741 - - -
7 Hb_001604_110 0.1904766053 - - -
8 Hb_177627_010 0.19165745 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000007_310 0.1952337577 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
10 Hb_066784_020 0.2021216432 - - conserved hypothetical protein [Ricinus communis]
11 Hb_171554_020 0.2068149254 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
12 Hb_000831_040 0.2077814489 - - -
13 Hb_132629_010 0.2136044655 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_007218_090 0.2221973654 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
15 Hb_010997_050 0.2408456623 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
16 Hb_005539_320 0.2421678331 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
17 Hb_001892_160 0.2422922507 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
18 Hb_010290_020 0.2436651366 - - RAB6-interacting protein, putative [Ricinus communis]
19 Hb_002837_090 0.2484995247 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
20 Hb_000580_060 0.2511336171 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]

Gene co-expression network

sample Hb_182310_010 Hb_182310_010 Hb_000563_280 Hb_000563_280 Hb_182310_010--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_182310_010--Hb_067345_050 Hb_105484_010 Hb_105484_010 Hb_182310_010--Hb_105484_010 Hb_075570_010 Hb_075570_010 Hb_182310_010--Hb_075570_010 Hb_001241_040 Hb_001241_040 Hb_182310_010--Hb_001241_040 Hb_001604_110 Hb_001604_110 Hb_182310_010--Hb_001604_110 Hb_000563_280--Hb_105484_010 Hb_000563_280--Hb_067345_050 Hb_066784_020 Hb_066784_020 Hb_000563_280--Hb_066784_020 Hb_000831_040 Hb_000831_040 Hb_000563_280--Hb_000831_040 Hb_010997_050 Hb_010997_050 Hb_000563_280--Hb_010997_050 Hb_067345_050--Hb_066784_020 Hb_001135_270 Hb_001135_270 Hb_067345_050--Hb_001135_270 Hb_003529_210 Hb_003529_210 Hb_067345_050--Hb_003529_210 Hb_081636_010 Hb_081636_010 Hb_067345_050--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_067345_050--Hb_005799_030 Hb_098842_010 Hb_098842_010 Hb_105484_010--Hb_098842_010 Hb_105484_010--Hb_010997_050 Hb_105484_010--Hb_000831_040 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_132629_010 Hb_132629_010 Hb_075570_010--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_075570_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_075570_010--Hb_003494_260 Hb_177627_010 Hb_177627_010 Hb_075570_010--Hb_177627_010 Hb_000153_040 Hb_000153_040 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_010290_020 Hb_010290_020 Hb_001241_040--Hb_010290_020 Hb_001241_040--Hb_000563_280 Hb_001241_040--Hb_001604_110 Hb_001241_040--Hb_000831_040 Hb_001892_160 Hb_001892_160 Hb_001241_040--Hb_001892_160 Hb_005539_320 Hb_005539_320 Hb_001604_110--Hb_005539_320 Hb_001604_110--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_001604_110--Hb_000153_020 Hb_001604_110--Hb_132629_010 Hb_001604_110--Hb_000007_310 Hb_001604_110--Hb_075570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0591445 0 0 0 0.0437143 0.114076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis