Hb_007827_020

Information

Type -
Description -
Location Contig7827: 27628-27888
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007827_020 0.0 - - -
2 Hb_000256_210 0.1722100103 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
3 Hb_002159_030 0.1742616401 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
4 Hb_000441_160 0.1765415032 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_024272_010 0.1826098384 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_007348_040 0.1855194494 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
7 Hb_000270_500 0.1893990251 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
8 Hb_010189_010 0.1894586101 - - -
9 Hb_000248_050 0.1928883607 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
10 Hb_001158_180 0.1996459533 - - -
11 Hb_000307_250 0.2032985563 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
12 Hb_000878_040 0.2034137923 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
13 Hb_002159_040 0.2060727747 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
14 Hb_002918_070 0.2079735948 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
15 Hb_094647_010 0.2085527926 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
16 Hb_007348_030 0.2097102097 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
17 Hb_000213_060 0.210100649 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
18 Hb_010317_030 0.2107089748 - - unknown [Picea sitchensis]
19 Hb_000453_080 0.2140188698 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_174865_050 0.2155256734 - - PREDICTED: neuroguidin [Jatropha curcas]

Gene co-expression network

sample Hb_007827_020 Hb_007827_020 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_024272_010 Hb_024272_010 Hb_007827_020--Hb_024272_010 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040 Hb_000270_500 Hb_000270_500 Hb_007827_020--Hb_000270_500 Hb_000256_210--Hb_002159_030 Hb_002159_040 Hb_002159_040 Hb_000256_210--Hb_002159_040 Hb_000256_210--Hb_000441_160 Hb_004920_060 Hb_004920_060 Hb_000256_210--Hb_004920_060 Hb_005322_030 Hb_005322_030 Hb_000256_210--Hb_005322_030 Hb_001196_070 Hb_001196_070 Hb_000256_210--Hb_001196_070 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_000441_160--Hb_002159_040 Hb_011497_010 Hb_011497_010 Hb_000441_160--Hb_011497_010 Hb_000441_160--Hb_000244_240 Hb_005000_270 Hb_005000_270 Hb_000441_160--Hb_005000_270 Hb_003716_020 Hb_003716_020 Hb_000441_160--Hb_003716_020 Hb_007348_030 Hb_007348_030 Hb_000441_160--Hb_007348_030 Hb_010317_030 Hb_010317_030 Hb_024272_010--Hb_010317_030 Hb_007810_100 Hb_007810_100 Hb_024272_010--Hb_007810_100 Hb_071869_010 Hb_071869_010 Hb_024272_010--Hb_071869_010 Hb_012725_100 Hb_012725_100 Hb_024272_010--Hb_012725_100 Hb_003106_010 Hb_003106_010 Hb_024272_010--Hb_003106_010 Hb_000250_080 Hb_000250_080 Hb_007348_040--Hb_000250_080 Hb_000453_080 Hb_000453_080 Hb_007348_040--Hb_000453_080 Hb_000136_150 Hb_000136_150 Hb_007348_040--Hb_000136_150 Hb_001486_120 Hb_001486_120 Hb_007348_040--Hb_001486_120 Hb_006816_410 Hb_006816_410 Hb_007348_040--Hb_006816_410 Hb_081879_030 Hb_081879_030 Hb_007348_040--Hb_081879_030 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.82 4.85178 5.55509 2.0954 21.2858 68.0091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19367 1.73649 9.66633 5.48697 6.72453

CAGE analysis