Hb_012725_100

Information

Type -
Description -
Location Contig12725: 112373-113101
Sequence    

Annotation

kegg
ID rcu:RCOM_0666230
description hypothetical protein
nr
ID XP_002528678.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9SRQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0666230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001450_100 0.2099481022 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_024272_010 0.2180794938 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
4 Hb_001983_010 0.2389652114 - - -
5 Hb_090497_010 0.2397445587 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
6 Hb_013399_080 0.2531993387 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
7 Hb_010317_030 0.2547815305 - - unknown [Picea sitchensis]
8 Hb_007810_100 0.2605866458 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
9 Hb_000397_120 0.2614211247 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
10 Hb_000163_280 0.2620914693 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
11 Hb_004449_240 0.2646453296 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
12 Hb_095831_010 0.2717309274 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
13 Hb_038011_010 0.2757362973 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
14 Hb_000215_260 0.2766444311 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
15 Hb_002326_050 0.2829814996 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
16 Hb_000684_130 0.2860499493 - - -
17 Hb_001718_050 0.2885659935 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
18 Hb_001247_170 0.2897923755 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
19 Hb_002159_030 0.294594009 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
20 Hb_005867_080 0.294623521 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]

Gene co-expression network

sample Hb_012725_100 Hb_012725_100 Hb_001450_100 Hb_001450_100 Hb_012725_100--Hb_001450_100 Hb_024272_010 Hb_024272_010 Hb_012725_100--Hb_024272_010 Hb_001983_010 Hb_001983_010 Hb_012725_100--Hb_001983_010 Hb_090497_010 Hb_090497_010 Hb_012725_100--Hb_090497_010 Hb_013399_080 Hb_013399_080 Hb_012725_100--Hb_013399_080 Hb_010317_030 Hb_010317_030 Hb_012725_100--Hb_010317_030 Hb_000215_260 Hb_000215_260 Hb_001450_100--Hb_000215_260 Hb_001450_100--Hb_001983_010 Hb_077211_010 Hb_077211_010 Hb_001450_100--Hb_077211_010 Hb_000099_210 Hb_000099_210 Hb_001450_100--Hb_000099_210 Hb_088428_010 Hb_088428_010 Hb_001450_100--Hb_088428_010 Hb_024272_010--Hb_010317_030 Hb_007827_020 Hb_007827_020 Hb_024272_010--Hb_007827_020 Hb_007810_100 Hb_007810_100 Hb_024272_010--Hb_007810_100 Hb_071869_010 Hb_071869_010 Hb_024272_010--Hb_071869_010 Hb_003106_010 Hb_003106_010 Hb_024272_010--Hb_003106_010 Hb_001983_010--Hb_010317_030 Hb_011645_030 Hb_011645_030 Hb_001983_010--Hb_011645_030 Hb_001983_010--Hb_024272_010 Hb_001983_010--Hb_077211_010 Hb_038011_010 Hb_038011_010 Hb_090497_010--Hb_038011_010 Hb_004899_060 Hb_004899_060 Hb_090497_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_090497_010--Hb_003881_050 Hb_000101_160 Hb_000101_160 Hb_090497_010--Hb_000101_160 Hb_090497_010--Hb_000099_210 Hb_000397_120 Hb_000397_120 Hb_013399_080--Hb_000397_120 Hb_000096_080 Hb_000096_080 Hb_013399_080--Hb_000096_080 Hb_000069_710 Hb_000069_710 Hb_013399_080--Hb_000069_710 Hb_000207_100 Hb_000207_100 Hb_013399_080--Hb_000207_100 Hb_022174_010 Hb_022174_010 Hb_013399_080--Hb_022174_010 Hb_000943_030 Hb_000943_030 Hb_013399_080--Hb_000943_030 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.265312 0.0278898 0.104747 0.244419 0.328834 0.654927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.323369 0 0.119521

CAGE analysis