Hb_024272_010

Information

Type -
Description -
Location Contig24272: 2487-3605
Sequence    

Annotation

kegg
ID sot:102582478
description uncharacterized LOC102582478
nr
ID XP_009760879.1
description PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024272_010 0.0 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
2 Hb_010317_030 0.1419369734 - - unknown [Picea sitchensis]
3 Hb_007827_020 0.1826098384 - - -
4 Hb_007810_100 0.211686733 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
5 Hb_071869_010 0.2136639634 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_012725_100 0.2180794938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003106_010 0.2240803714 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
8 Hb_001718_050 0.2329921723 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
9 Hb_000441_160 0.2341609921 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_002159_030 0.2380392925 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
11 Hb_000878_040 0.2395344712 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
12 Hb_000397_120 0.2430860838 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
13 Hb_005271_150 0.2438953676 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
14 Hb_000117_010 0.2460761492 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
15 Hb_000260_690 0.2462426985 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
16 Hb_002159_040 0.2465687221 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
17 Hb_000256_210 0.247496976 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
18 Hb_005867_080 0.2476410103 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
19 Hb_011639_050 0.249435059 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002326_050 0.2495782743 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]

Gene co-expression network

sample Hb_024272_010 Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_024272_010--Hb_010317_030 Hb_007827_020 Hb_007827_020 Hb_024272_010--Hb_007827_020 Hb_007810_100 Hb_007810_100 Hb_024272_010--Hb_007810_100 Hb_071869_010 Hb_071869_010 Hb_024272_010--Hb_071869_010 Hb_012725_100 Hb_012725_100 Hb_024272_010--Hb_012725_100 Hb_003106_010 Hb_003106_010 Hb_024272_010--Hb_003106_010 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060 Hb_001983_010 Hb_001983_010 Hb_010317_030--Hb_001983_010 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040 Hb_000270_500 Hb_000270_500 Hb_007827_020--Hb_000270_500 Hb_000850_050 Hb_000850_050 Hb_007810_100--Hb_000850_050 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_000206_190 Hb_000206_190 Hb_071869_010--Hb_000206_190 Hb_002154_070 Hb_002154_070 Hb_071869_010--Hb_002154_070 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_001450_100 Hb_001450_100 Hb_012725_100--Hb_001450_100 Hb_012725_100--Hb_001983_010 Hb_090497_010 Hb_090497_010 Hb_012725_100--Hb_090497_010 Hb_013399_080 Hb_013399_080 Hb_012725_100--Hb_013399_080 Hb_012725_100--Hb_010317_030 Hb_141939_010 Hb_141939_010 Hb_003106_010--Hb_141939_010 Hb_007064_040 Hb_007064_040 Hb_003106_010--Hb_007064_040 Hb_000836_630 Hb_000836_630 Hb_003106_010--Hb_000836_630 Hb_011639_050 Hb_011639_050 Hb_003106_010--Hb_011639_050 Hb_011287_090 Hb_011287_090 Hb_003106_010--Hb_011287_090 Hb_001946_280 Hb_001946_280 Hb_003106_010--Hb_001946_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.835681 0.051228 0.212566 0.190202 0.394514 1.60735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0702841 0 0.598061 0.111961 0.221172

CAGE analysis