Hb_007348_040

Information

Type transcription factor
Description TF Family: PHD
Location Contig7348: 70855-72947
Sequence    

Annotation

kegg
ID rcu:RCOM_1314010
description hypothetical protein
nr
ID XP_002518927.1
description hypothetical protein RCOM_1314010 [Ricinus communis]
swissprot
ID Q9C810
description PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1
trembl
ID B9RYV8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314010 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring fyve phd zinc finger superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56177: 72641-73191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007348_040 0.0 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
2 Hb_000250_080 0.1173784213 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
3 Hb_000453_080 0.119077419 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000136_150 0.1241829097 - - hypothetical protein VITISV_038366 [Vitis vinifera]
5 Hb_001486_120 0.1258608769 - - PREDICTED: importin-5-like [Jatropha curcas]
6 Hb_006816_410 0.1329330752 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
7 Hb_081879_030 0.1342990884 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
8 Hb_000365_060 0.1344918133 - - 5'->3' exoribonuclease, putative [Ricinus communis]
9 Hb_002105_080 0.1357426535 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_000805_310 0.1381348713 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
11 Hb_001433_190 0.1388329341 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
12 Hb_010128_120 0.1454106373 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
13 Hb_005129_050 0.1457071303 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
14 Hb_000250_070 0.1467781097 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
15 Hb_007348_030 0.1467804714 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
16 Hb_009421_030 0.1471860773 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
17 Hb_004037_030 0.1483408238 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
18 Hb_002159_030 0.1486206428 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
19 Hb_002918_070 0.1490364084 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
20 Hb_000248_050 0.1508318756 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007348_040 Hb_007348_040 Hb_000250_080 Hb_000250_080 Hb_007348_040--Hb_000250_080 Hb_000453_080 Hb_000453_080 Hb_007348_040--Hb_000453_080 Hb_000136_150 Hb_000136_150 Hb_007348_040--Hb_000136_150 Hb_001486_120 Hb_001486_120 Hb_007348_040--Hb_001486_120 Hb_006816_410 Hb_006816_410 Hb_007348_040--Hb_006816_410 Hb_081879_030 Hb_081879_030 Hb_007348_040--Hb_081879_030 Hb_009421_030 Hb_009421_030 Hb_000250_080--Hb_009421_030 Hb_172256_010 Hb_172256_010 Hb_000250_080--Hb_172256_010 Hb_000250_080--Hb_001486_120 Hb_006882_010 Hb_006882_010 Hb_000250_080--Hb_006882_010 Hb_001433_190 Hb_001433_190 Hb_000250_080--Hb_001433_190 Hb_012016_020 Hb_012016_020 Hb_000453_080--Hb_012016_020 Hb_001582_030 Hb_001582_030 Hb_000453_080--Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_000453_080--Hb_005000_270 Hb_005635_010 Hb_005635_010 Hb_000453_080--Hb_005635_010 Hb_002105_080 Hb_002105_080 Hb_000453_080--Hb_002105_080 Hb_000453_080--Hb_001486_120 Hb_000317_440 Hb_000317_440 Hb_000136_150--Hb_000317_440 Hb_000136_150--Hb_001486_120 Hb_016657_020 Hb_016657_020 Hb_000136_150--Hb_016657_020 Hb_001437_100 Hb_001437_100 Hb_000136_150--Hb_001437_100 Hb_002883_010 Hb_002883_010 Hb_000136_150--Hb_002883_010 Hb_000805_310 Hb_000805_310 Hb_000136_150--Hb_000805_310 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_001486_120--Hb_000805_310 Hb_001486_120--Hb_000317_440 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_006816_410--Hb_002105_080 Hb_000023_060 Hb_000023_060 Hb_006816_410--Hb_000023_060 Hb_005122_060 Hb_005122_060 Hb_006816_410--Hb_005122_060 Hb_006816_410--Hb_001433_190 Hb_006588_050 Hb_006588_050 Hb_006816_410--Hb_006588_050 Hb_042487_010 Hb_042487_010 Hb_006816_410--Hb_042487_010 Hb_000347_130 Hb_000347_130 Hb_081879_030--Hb_000347_130 Hb_000436_040 Hb_000436_040 Hb_081879_030--Hb_000436_040 Hb_000743_050 Hb_000743_050 Hb_081879_030--Hb_000743_050 Hb_002903_080 Hb_002903_080 Hb_081879_030--Hb_002903_080 Hb_025012_010 Hb_025012_010 Hb_081879_030--Hb_025012_010 Hb_081879_030--Hb_042487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0577 9.32109 1.93771 2.50409 22.6535 45.3963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81575 2.23757 7.4438 9.38199 10.2535

CAGE analysis