Hb_002154_070

Information

Type desease resistance
Description Gene Name: AAA_25
Location Contig2154: 71040-72690
Sequence    

Annotation

kegg
ID mis:MICPUN_55469
description hypothetical protein
nr
ID KGN45855.1
description hypothetical protein Csa_6G014750 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0K7W5
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014750 PE=4 SV=1
Gene Ontology
ID GO:0005730
description atp-dependent rna helicase dhx33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_070 0.0 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
2 Hb_071869_010 0.1590418177 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
3 Hb_001718_050 0.188219207 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
4 Hb_004244_010 0.1894752081 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
5 Hb_000206_190 0.1923111 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
6 Hb_001050_030 0.1959164983 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_028912_040 0.2135211976 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
8 Hb_000928_050 0.2139255647 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
9 Hb_000100_160 0.226844174 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
10 Hb_004333_050 0.2289288815 - - -
11 Hb_004224_020 0.2319377229 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
12 Hb_012180_040 0.2364276637 - - hypothetical protein VITISV_042517 [Vitis vinifera]
13 Hb_083641_010 0.236646467 - - SECY isoform 1 [Theobroma cacao]
14 Hb_000850_050 0.2442476275 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
15 Hb_138781_010 0.2458171281 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
16 Hb_002601_130 0.2463066067 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
17 Hb_036702_010 0.2469473314 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_008484_010 0.2498768588 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
19 Hb_004987_070 0.250459376 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
20 Hb_006663_070 0.251164777 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]

Gene co-expression network

sample Hb_002154_070 Hb_002154_070 Hb_071869_010 Hb_071869_010 Hb_002154_070--Hb_071869_010 Hb_001718_050 Hb_001718_050 Hb_002154_070--Hb_001718_050 Hb_004244_010 Hb_004244_010 Hb_002154_070--Hb_004244_010 Hb_000206_190 Hb_000206_190 Hb_002154_070--Hb_000206_190 Hb_001050_030 Hb_001050_030 Hb_002154_070--Hb_001050_030 Hb_028912_040 Hb_028912_040 Hb_002154_070--Hb_028912_040 Hb_071869_010--Hb_000206_190 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_000850_050 Hb_000850_050 Hb_001718_050--Hb_000850_050 Hb_006663_070 Hb_006663_070 Hb_001718_050--Hb_006663_070 Hb_002601_130 Hb_002601_130 Hb_001718_050--Hb_002601_130 Hb_007810_100 Hb_007810_100 Hb_001718_050--Hb_007810_100 Hb_028227_010 Hb_028227_010 Hb_001718_050--Hb_028227_010 Hb_000679_150 Hb_000679_150 Hb_001718_050--Hb_000679_150 Hb_003805_060 Hb_003805_060 Hb_004244_010--Hb_003805_060 Hb_002518_110 Hb_002518_110 Hb_004244_010--Hb_002518_110 Hb_000424_150 Hb_000424_150 Hb_004244_010--Hb_000424_150 Hb_004244_010--Hb_028912_040 Hb_032920_100 Hb_032920_100 Hb_004244_010--Hb_032920_100 Hb_000206_190--Hb_001050_030 Hb_102632_010 Hb_102632_010 Hb_000206_190--Hb_102632_010 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_000077_220 Hb_000077_220 Hb_001050_030--Hb_000077_220 Hb_002814_060 Hb_002814_060 Hb_001050_030--Hb_002814_060 Hb_001050_030--Hb_000424_150 Hb_003376_260 Hb_003376_260 Hb_001050_030--Hb_003376_260 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428123 0.299967 0.311544 0.407065 0.208258 1.79308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0854942 0 0.477461 0.301326 0.925763

CAGE analysis