Hb_001718_050

Information

Type -
Description -
Location Contig1718: 79017-82798
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022115mg
description hypothetical protein
nr
ID XP_009130050.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
swissprot
ID P11369
description LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2
trembl
ID M5VU98
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022115mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001718_050 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
2 Hb_000850_050 0.1023297021 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
3 Hb_006663_070 0.1336461812 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
4 Hb_002601_130 0.1360175904 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
5 Hb_007810_100 0.1365608835 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
6 Hb_028227_010 0.1431463102 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
7 Hb_000679_150 0.1479372305 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
8 Hb_010925_020 0.148937842 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
9 Hb_004218_240 0.1511352217 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
10 Hb_003656_180 0.1523360596 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
11 Hb_012404_070 0.1562247077 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
12 Hb_009969_030 0.1577637046 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
13 Hb_081879_030 0.1577845273 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
14 Hb_006915_060 0.1587060202 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
15 Hb_000785_040 0.1609852823 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
16 Hb_001473_090 0.1610199049 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
17 Hb_000441_180 0.1616242356 - - Early endosome antigen, putative [Ricinus communis]
18 Hb_003029_130 0.162420261 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_002493_020 0.1627786558 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
20 Hb_028912_040 0.1636774332 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]

Gene co-expression network

sample Hb_001718_050 Hb_001718_050 Hb_000850_050 Hb_000850_050 Hb_001718_050--Hb_000850_050 Hb_006663_070 Hb_006663_070 Hb_001718_050--Hb_006663_070 Hb_002601_130 Hb_002601_130 Hb_001718_050--Hb_002601_130 Hb_007810_100 Hb_007810_100 Hb_001718_050--Hb_007810_100 Hb_028227_010 Hb_028227_010 Hb_001718_050--Hb_028227_010 Hb_000679_150 Hb_000679_150 Hb_001718_050--Hb_000679_150 Hb_000850_050--Hb_007810_100 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_117552_010 Hb_117552_010 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_003656_180 Hb_003656_180 Hb_000850_050--Hb_003656_180 Hb_006663_070--Hb_000679_150 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_000170_190 Hb_000170_190 Hb_002601_130--Hb_000170_190 Hb_002276_060 Hb_002276_060 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_008489_020 Hb_008489_020 Hb_002601_130--Hb_008489_020 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_000208_260 Hb_000208_260 Hb_028227_010--Hb_000208_260 Hb_001948_130 Hb_001948_130 Hb_028227_010--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_028227_010--Hb_003549_090 Hb_002248_110 Hb_002248_110 Hb_028227_010--Hb_002248_110 Hb_058999_030 Hb_058999_030 Hb_028227_010--Hb_058999_030 Hb_029904_020 Hb_029904_020 Hb_028227_010--Hb_029904_020 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197063 0.0900075 0.14124 0.143408 0.207903 0.576084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0669523 0.0395135 0.150807 0.0941124 0.196194

CAGE analysis