Hb_007810_100

Information

Type -
Description -
Location Contig7810: 69821-73602
Sequence    

Annotation

kegg
ID rcu:RCOM_1206840
description Synaptic glycoprotein SC2, putative (EC:1.3.99.5)
nr
ID XP_002530850.1
description Synaptic glycoprotein SC2, putative [Ricinus communis]
swissprot
ID Q9M2U2
description Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=1 SV=1
trembl
ID B9SXZ3
description Synaptic glycoprotein SC2, putative OS=Ricinus communis GN=RCOM_1206840 PE=4 SV=1
Gene Ontology
ID GO:0005886
description very-long-chain enoyl- reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57969: 69976-73313 , PASA_asmbl_57970: 73070-73576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_100 0.0 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
2 Hb_000850_050 0.0965381597 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
3 Hb_018954_020 0.1234620895 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
4 Hb_000197_210 0.1260049049 - - phosphatidylinositol transporter, putative [Ricinus communis]
5 Hb_002159_040 0.1296547862 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
6 Hb_008406_140 0.1298484746 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_000497_230 0.1316747557 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
8 Hb_033187_050 0.1316765769 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
9 Hb_009969_030 0.1344876704 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
10 Hb_012404_070 0.1362628085 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
11 Hb_001718_050 0.1365608835 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
12 Hb_011497_010 0.139095998 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
13 Hb_000236_380 0.1416630286 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
14 Hb_000042_270 0.141915861 - - myosin vIII, putative [Ricinus communis]
15 Hb_000189_510 0.1448148425 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
16 Hb_003376_050 0.146062995 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000566_100 0.1467393335 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
18 Hb_000797_050 0.1468842878 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
19 Hb_007451_050 0.1474556065 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
20 Hb_003436_050 0.147583873 - - arf gtpase-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007810_100 Hb_007810_100 Hb_000850_050 Hb_000850_050 Hb_007810_100--Hb_000850_050 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_001718_050 Hb_001718_050 Hb_000850_050--Hb_001718_050 Hb_117552_010 Hb_117552_010 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_003656_180 Hb_003656_180 Hb_000850_050--Hb_003656_180 Hb_018954_020--Hb_000497_230 Hb_018954_020--Hb_002159_040 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_000197_210--Hb_000497_230 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_001279_330 Hb_001279_330 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_000497_230--Hb_008406_140 Hb_000497_230--Hb_001279_330 Hb_000497_230--Hb_004143_070 Hb_000497_230--Hb_002159_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4429 6.08302 9.02496 11.2095 15.5062 30.1293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28617 3.1993 14.5166 4.53214 6.63164

CAGE analysis