Hb_000850_050

Information

Type -
Description -
Location Contig850: 83729-85768
Sequence    

Annotation

kegg
ID rcu:RCOM_1078440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012066558.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
swissprot
ID Q9SXD1
description Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2
trembl
ID A0A067L5U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24372 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60400: 84466-85859
cDNA
(Sanger)
(ID:Location)		 038_B08.ab1: 85055-85859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000850_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
2 Hb_007810_100 0.0965381597 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
3 Hb_004218_240 0.1018198023 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
4 Hb_001718_050 0.1023297021 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
5 Hb_117552_010 0.1054267332 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_004306_080 0.1054436074 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
7 Hb_003656_180 0.1058602739 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
8 Hb_000785_040 0.1067924512 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
9 Hb_000010_390 0.109978724 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
10 Hb_006915_060 0.1100436114 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
11 Hb_001473_090 0.1102749568 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
12 Hb_002493_020 0.1104475416 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
13 Hb_002081_010 0.1126143966 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003847_120 0.1151276507 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_003436_050 0.1154413232 - - arf gtpase-activating protein, putative [Ricinus communis]
16 Hb_003544_100 0.1170786125 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_007062_020 0.1174755318 - - gcn4-complementing protein, putative [Ricinus communis]
18 Hb_003029_130 0.1188672609 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_009969_030 0.1189969829 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
20 Hb_000832_220 0.1190256678 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000850_050 Hb_000850_050 Hb_007810_100 Hb_007810_100 Hb_000850_050--Hb_007810_100 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_001718_050 Hb_001718_050 Hb_000850_050--Hb_001718_050 Hb_117552_010 Hb_117552_010 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_003656_180 Hb_003656_180 Hb_000850_050--Hb_003656_180 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_000023_190 Hb_000023_190 Hb_004218_240--Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_010381_060 Hb_010381_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040 Hb_006663_070 Hb_006663_070 Hb_001718_050--Hb_006663_070 Hb_002601_130 Hb_002601_130 Hb_001718_050--Hb_002601_130 Hb_001718_050--Hb_007810_100 Hb_028227_010 Hb_028227_010 Hb_001718_050--Hb_028227_010 Hb_000679_150 Hb_000679_150 Hb_001718_050--Hb_000679_150 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_004228_010 Hb_004228_010 Hb_004306_080--Hb_004228_010 Hb_000785_040 Hb_000785_040 Hb_004306_080--Hb_000785_040 Hb_000116_500 Hb_000116_500 Hb_004306_080--Hb_000116_500 Hb_004102_140 Hb_004102_140 Hb_004306_080--Hb_004102_140 Hb_007062_020 Hb_007062_020 Hb_004306_080--Hb_007062_020 Hb_002493_020 Hb_002493_020 Hb_004306_080--Hb_002493_020 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003884_030 Hb_003884_030 Hb_003656_180--Hb_003884_030 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05664 0.855192 0.840052 1.13324 1.79937 3.06483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.485727 0.382187 1.28546 0.822304 1.32245

CAGE analysis