Hb_000100_130

Information

Type -
Description -
Location Contig100: 331930-337476
Sequence    

Annotation

kegg
ID sbi:SORBI_01g001450
description SORBIDRAFT_01g001450, Sb01g001450; hypothetical protein
nr
ID CAN62207.1
description hypothetical protein VITISV_026702 [Vitis vinifera]
swissprot
ID O68007
description Bacitracin synthase 2 OS=Bacillus licheniformis GN=bacB PE=3 SV=1
trembl
ID A5C987
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026702 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00205: 307454-335815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_130 0.0 - - hypothetical protein VITISV_026702 [Vitis vinifera]
2 Hb_004374_080 0.1427474787 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
3 Hb_012404_070 0.1458497232 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
4 Hb_007810_100 0.1547780907 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
5 Hb_018954_020 0.1586504656 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
6 Hb_010925_020 0.1642503515 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
7 Hb_000850_050 0.1642990067 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
8 Hb_001882_040 0.1645144016 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
9 Hb_002783_010 0.1659810797 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
10 Hb_001040_120 0.1668513654 - - allantoinase, putative [Ricinus communis]
11 Hb_002742_080 0.1670754178 - - unknown [Populus trichocarpa]
12 Hb_003436_050 0.1674305672 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000832_220 0.1683954953 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
14 Hb_000139_230 0.1698136194 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
15 Hb_002742_070 0.1708269283 - - PREDICTED: villin-4-like [Jatropha curcas]
16 Hb_013358_080 0.1713872403 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
17 Hb_011953_030 0.1716387432 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
18 Hb_002815_060 0.1717406091 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
19 Hb_000566_100 0.1720025492 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
20 Hb_002159_040 0.1729331831 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]

Gene co-expression network

sample Hb_000100_130 Hb_000100_130 Hb_004374_080 Hb_004374_080 Hb_000100_130--Hb_004374_080 Hb_012404_070 Hb_012404_070 Hb_000100_130--Hb_012404_070 Hb_007810_100 Hb_007810_100 Hb_000100_130--Hb_007810_100 Hb_018954_020 Hb_018954_020 Hb_000100_130--Hb_018954_020 Hb_010925_020 Hb_010925_020 Hb_000100_130--Hb_010925_020 Hb_000850_050 Hb_000850_050 Hb_000100_130--Hb_000850_050 Hb_002000_060 Hb_002000_060 Hb_004374_080--Hb_002000_060 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_000139_230 Hb_000139_230 Hb_004374_080--Hb_000139_230 Hb_003872_010 Hb_003872_010 Hb_004374_080--Hb_003872_010 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_001163_120 Hb_001163_120 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_002249_120 Hb_002249_120 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170 Hb_007810_100--Hb_000850_050 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_018954_020--Hb_000497_230 Hb_018954_020--Hb_002159_040 Hb_018954_020--Hb_008406_140 Hb_018954_020--Hb_000566_100 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_003029_130 Hb_003029_130 Hb_010925_020--Hb_003029_130 Hb_001473_090 Hb_001473_090 Hb_010925_020--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_010925_020--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_010925_020--Hb_001178_150 Hb_001369_350 Hb_001369_350 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_001718_050 Hb_001718_050 Hb_000850_050--Hb_001718_050 Hb_117552_010 Hb_117552_010 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_003656_180 Hb_003656_180 Hb_000850_050--Hb_003656_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9741 5.86072 5.44978 6.9447 4.78826 17.8013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11018 0.552565 3.34985 2.85629 3.69472

CAGE analysis