Hb_001050_030

Information

Type -
Description -
Location Contig1050: 63236-67014
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01706: 64985-65588 , PASA_asmbl_01707: 63094-96684 , PASA_asmbl_01708: 66892-67229 , PASA_asmbl_01710: 54657-88947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001050_030 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_000206_190 0.1810633354 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
3 Hb_000077_220 0.1941553673 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
4 Hb_002154_070 0.1959164983 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
5 Hb_002814_060 0.1974635239 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
6 Hb_000424_150 0.2024121867 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
7 Hb_003376_260 0.2066763249 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
8 Hb_005048_140 0.2136738087 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003604_030 0.2168121387 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
10 Hb_001050_060 0.2220483101 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
11 Hb_008029_020 0.2239397851 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
12 Hb_012539_030 0.2249133007 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
13 Hb_004987_070 0.225753271 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
14 Hb_001117_160 0.2260001849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
15 Hb_045870_010 0.2261019295 - - -
16 Hb_004884_030 0.2261718271 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
17 Hb_001508_020 0.2268549639 - - myosin vIII, putative [Ricinus communis]
18 Hb_005754_030 0.2271369356 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
19 Hb_052128_010 0.2285547504 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
20 Hb_004466_050 0.2288468633 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]

Gene co-expression network

sample Hb_001050_030 Hb_001050_030 Hb_000206_190 Hb_000206_190 Hb_001050_030--Hb_000206_190 Hb_000077_220 Hb_000077_220 Hb_001050_030--Hb_000077_220 Hb_002154_070 Hb_002154_070 Hb_001050_030--Hb_002154_070 Hb_002814_060 Hb_002814_060 Hb_001050_030--Hb_002814_060 Hb_000424_150 Hb_000424_150 Hb_001050_030--Hb_000424_150 Hb_003376_260 Hb_003376_260 Hb_001050_030--Hb_003376_260 Hb_071869_010 Hb_071869_010 Hb_000206_190--Hb_071869_010 Hb_102632_010 Hb_102632_010 Hb_000206_190--Hb_102632_010 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_000206_190--Hb_002154_070 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_001221_140 Hb_001221_140 Hb_000077_220--Hb_001221_140 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020 Hb_002154_070--Hb_071869_010 Hb_001718_050 Hb_001718_050 Hb_002154_070--Hb_001718_050 Hb_004244_010 Hb_004244_010 Hb_002154_070--Hb_004244_010 Hb_028912_040 Hb_028912_040 Hb_002154_070--Hb_028912_040 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_006508_030 Hb_006508_030 Hb_002814_060--Hb_006508_030 Hb_074197_020 Hb_074197_020 Hb_002814_060--Hb_074197_020 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_000424_150--Hb_074197_020 Hb_000424_150--Hb_002814_060 Hb_002301_310 Hb_002301_310 Hb_000424_150--Hb_002301_310 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_000424_150--Hb_003376_260 Hb_003471_020 Hb_003471_020 Hb_000424_150--Hb_003471_020 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_003376_260--Hb_002301_310 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22626 3.48462 2.55703 1.85868 1.62 7.19234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209854 0.0165123 0.784149 1.87113 4.23035

CAGE analysis