Hb_004244_010

Information

Type -
Description -
Location Contig4244: 37-512
Sequence    

Annotation

kegg
ID cic:CICLE_v10026939mg
description hypothetical protein
nr
ID KDP37135.1
description hypothetical protein JCGZ_06191 [Jatropha curcas]
swissprot
ID Q940K0
description Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2
trembl
ID A0A067KXZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06191 PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004244_010 0.0 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
2 Hb_002154_070 0.1894752081 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
3 Hb_003805_060 0.2181099377 - - protein binding protein, putative [Ricinus communis]
4 Hb_002518_110 0.2240637576 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
5 Hb_000424_150 0.2244073889 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
6 Hb_028912_040 0.2273110767 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
7 Hb_032920_100 0.2275311337 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
8 Hb_001050_030 0.2313856097 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_174473_010 0.2317978342 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
10 Hb_071869_010 0.2455864157 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
11 Hb_172970_010 0.2462082254 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
12 Hb_183443_010 0.2465859957 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
13 Hb_000206_190 0.2500872383 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
14 Hb_005892_020 0.2526660579 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
15 Hb_138781_010 0.2526953578 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
16 Hb_006960_010 0.2541067298 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001014_130 0.2541775423 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
18 Hb_135442_010 0.2605116591 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_000928_050 0.2625640331 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
20 Hb_127552_060 0.2641199793 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004244_010 Hb_004244_010 Hb_002154_070 Hb_002154_070 Hb_004244_010--Hb_002154_070 Hb_003805_060 Hb_003805_060 Hb_004244_010--Hb_003805_060 Hb_002518_110 Hb_002518_110 Hb_004244_010--Hb_002518_110 Hb_000424_150 Hb_000424_150 Hb_004244_010--Hb_000424_150 Hb_028912_040 Hb_028912_040 Hb_004244_010--Hb_028912_040 Hb_032920_100 Hb_032920_100 Hb_004244_010--Hb_032920_100 Hb_071869_010 Hb_071869_010 Hb_002154_070--Hb_071869_010 Hb_001718_050 Hb_001718_050 Hb_002154_070--Hb_001718_050 Hb_000206_190 Hb_000206_190 Hb_002154_070--Hb_000206_190 Hb_001050_030 Hb_001050_030 Hb_002154_070--Hb_001050_030 Hb_002154_070--Hb_028912_040 Hb_134279_010 Hb_134279_010 Hb_003805_060--Hb_134279_010 Hb_012338_030 Hb_012338_030 Hb_003805_060--Hb_012338_030 Hb_001912_080 Hb_001912_080 Hb_003805_060--Hb_001912_080 Hb_003805_070 Hb_003805_070 Hb_003805_060--Hb_003805_070 Hb_000940_170 Hb_000940_170 Hb_003805_060--Hb_000940_170 Hb_011310_090 Hb_011310_090 Hb_002518_110--Hb_011310_090 Hb_002636_040 Hb_002636_040 Hb_002518_110--Hb_002636_040 Hb_017098_010 Hb_017098_010 Hb_002518_110--Hb_017098_010 Hb_008123_010 Hb_008123_010 Hb_002518_110--Hb_008123_010 Hb_090530_010 Hb_090530_010 Hb_002518_110--Hb_090530_010 Hb_074197_020 Hb_074197_020 Hb_000424_150--Hb_074197_020 Hb_002814_060 Hb_002814_060 Hb_000424_150--Hb_002814_060 Hb_002301_310 Hb_002301_310 Hb_000424_150--Hb_002301_310 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_003376_260 Hb_003376_260 Hb_000424_150--Hb_003376_260 Hb_003471_020 Hb_003471_020 Hb_000424_150--Hb_003471_020 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_000330_080 Hb_000330_080 Hb_032920_100--Hb_000330_080 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_001709_130 Hb_001709_130 Hb_032920_100--Hb_001709_130 Hb_004884_020 Hb_004884_020 Hb_032920_100--Hb_004884_020 Hb_032920_100--Hb_008123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208259 0.163921 0.0524281 0.255951 0.123621 0.767259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.195453 0.391371 0.646316

CAGE analysis