Hb_012338_030

Information

Type -
Description -
Location Contig12338: 71549-76003
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012338_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003805_060 0.2102925348 - - protein binding protein, putative [Ricinus communis]
3 Hb_146339_010 0.2527023883 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_000959_090 0.2546451593 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001912_080 0.2550772252 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
6 Hb_003805_070 0.2787594517 - - PREDICTED: sacsin [Jatropha curcas]
7 Hb_000711_020 0.2887206188 - - major allergen Pru ar 1-like [Jatropha curcas]
8 Hb_049275_010 0.2896603371 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
9 Hb_000101_260 0.2906372483 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005511_090 0.2917376787 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
11 Hb_134279_010 0.30185847 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
12 Hb_167977_010 0.3033795976 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
13 Hb_184520_010 0.3111384406 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_000032_470 0.3170107077 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
15 Hb_014548_030 0.3202853435 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
16 Hb_148593_010 0.3211968267 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
17 Hb_032920_100 0.3238256293 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
18 Hb_001660_020 0.3279630813 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
19 Hb_183443_010 0.3283759402 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_001135_280 0.328918064 - - -

Gene co-expression network

sample Hb_012338_030 Hb_012338_030 Hb_003805_060 Hb_003805_060 Hb_012338_030--Hb_003805_060 Hb_146339_010 Hb_146339_010 Hb_012338_030--Hb_146339_010 Hb_000959_090 Hb_000959_090 Hb_012338_030--Hb_000959_090 Hb_001912_080 Hb_001912_080 Hb_012338_030--Hb_001912_080 Hb_003805_070 Hb_003805_070 Hb_012338_030--Hb_003805_070 Hb_000711_020 Hb_000711_020 Hb_012338_030--Hb_000711_020 Hb_134279_010 Hb_134279_010 Hb_003805_060--Hb_134279_010 Hb_003805_060--Hb_001912_080 Hb_004244_010 Hb_004244_010 Hb_003805_060--Hb_004244_010 Hb_003805_060--Hb_003805_070 Hb_000940_170 Hb_000940_170 Hb_003805_060--Hb_000940_170 Hb_063943_010 Hb_063943_010 Hb_146339_010--Hb_063943_010 Hb_183443_010 Hb_183443_010 Hb_146339_010--Hb_183443_010 Hb_003059_010 Hb_003059_010 Hb_146339_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_146339_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_146339_010--Hb_003175_110 Hb_000714_040 Hb_000714_040 Hb_146339_010--Hb_000714_040 Hb_000959_090--Hb_001912_080 Hb_000136_040 Hb_000136_040 Hb_000959_090--Hb_000136_040 Hb_001780_090 Hb_001780_090 Hb_000959_090--Hb_001780_090 Hb_000032_470 Hb_000032_470 Hb_000959_090--Hb_000032_470 Hb_007101_200 Hb_007101_200 Hb_000959_090--Hb_007101_200 Hb_003206_020 Hb_003206_020 Hb_000959_090--Hb_003206_020 Hb_000062_450 Hb_000062_450 Hb_001912_080--Hb_000062_450 Hb_001912_080--Hb_000136_040 Hb_009270_010 Hb_009270_010 Hb_001912_080--Hb_009270_010 Hb_001912_080--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001912_080--Hb_020665_010 Hb_006452_240 Hb_006452_240 Hb_003805_070--Hb_006452_240 Hb_005523_010 Hb_005523_010 Hb_003805_070--Hb_005523_010 Hb_148593_010 Hb_148593_010 Hb_003805_070--Hb_148593_010 Hb_011616_020 Hb_011616_020 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_003805_070--Hb_001912_080 Hb_014548_030 Hb_014548_030 Hb_000711_020--Hb_014548_030 Hb_012305_090 Hb_012305_090 Hb_000711_020--Hb_012305_090 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_049275_010 Hb_049275_010 Hb_000711_020--Hb_049275_010 Hb_001446_010 Hb_001446_010 Hb_000711_020--Hb_001446_010 Hb_086607_010 Hb_086607_010 Hb_000711_020--Hb_086607_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0093212 0 0.00322863 0.0132514 0.0129074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0161655 0.00999917 0.0180374

CAGE analysis